Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,119,174 – 5,119,273 |
Length | 99 |
Max. P | 0.854302 |
Location | 5,119,174 – 5,119,273 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 83.36 |
Mean single sequence MFE | -32.75 |
Consensus MFE | -20.86 |
Energy contribution | -20.05 |
Covariance contribution | -0.81 |
Combinations/Pair | 1.19 |
Mean z-score | -2.03 |
Structure conservation index | 0.64 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5119174 99 + 27905053 UUUGCUCCAGUUUGUCAGAGCCACUUUGCUCCACUUGC------------------CCCAGUUGAGUUCCUUCGACUGAAGUGGCCCUUGAGCAAUGGGGCUCAUUAAUUCAGUUGU ...((((((..(((((((.(((((((.((.......))------------------..((((((((....)))))))))))))))..)))).)))))))))................ ( -31.70) >DroSim_CAF1 21354 117 + 1 UUUGCUCCAGUUUGUCAGAGGCACUUUGCUCCAGUUGCUUCAGUUGCUCCAGUUGGCCCAGUUGAGUUCCUUCGGCUGAAGUGGCCCUUGAGCAAUGGGGCUCAUUAAUUCAGUUGU ...(((((.........((((((((.......)).)))))).(((((((.((..((((((((((((....))))))))....)))))).))))))))))))................ ( -39.50) >DroEre_CAF1 22275 94 + 1 UUUGCUCCAGUUUGUCAGAGGCACUUUGCUCCAGUUGC------------------UC-----AAGUCCCUUCAGUUGAAGUGGCCCCUGAGCAAUGGGGCUCAUUAAUUCAGUUGU ...(((((.........(..((.....))..).(((((------------------((-----(.(((.((((....)))).)))...)))))))))))))................ ( -28.30) >DroYak_CAF1 22452 94 + 1 UUUGCCCCAGUUUGUCAGAGGCACUUUGCUCCAGUUGC------------------UC-----AAGUUCCUUCGGUUGAAGUGGCCCUUGAGCAAUGGGGCUCAUUAAUUCAGUUGU ...(((((.........(..((.....))..).(((((------------------((-----(((.((((((....)))).))..)))))))))))))))................ ( -31.50) >consensus UUUGCUCCAGUUUGUCAGAGGCACUUUGCUCCAGUUGC__________________CC_____AAGUUCCUUCGGCUGAAGUGGCCCUUGAGCAAUGGGGCUCAUUAAUUCAGUUGU .................((((.((((.((.......)).........................)))).))))((((((((((((((((........))))).)))...)))))))). (-20.86 = -20.05 + -0.81)
Location | 5,119,174 – 5,119,273 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 83.36 |
Mean single sequence MFE | -30.75 |
Consensus MFE | -18.38 |
Energy contribution | -18.62 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.50 |
Structure conservation index | 0.60 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854302 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5119174 99 - 27905053 ACAACUGAAUUAAUGAGCCCCAUUGCUCAAGGGCCACUUCAGUCGAAGGAACUCAACUGGG------------------GCAAGUGGAGCAAAGUGGCUCUGACAAACUGGAGCAAA ................((.((((((.(((.(((((((((...((....)).(((.(((...------------------...))).)))..)))))))))))))))..))).))... ( -29.70) >DroSim_CAF1 21354 117 - 1 ACAACUGAAUUAAUGAGCCCCAUUGCUCAAGGGCCACUUCAGCCGAAGGAACUCAACUGGGCCAACUGGAGCAACUGAAGCAACUGGAGCAAAGUGCCUCUGACAAACUGGAGCAAA ................((.(((((((((...((((.((((....))))...(......))))).....))))))..((.(((.((.......))))).))........))).))... ( -28.70) >DroEre_CAF1 22275 94 - 1 ACAACUGAAUUAAUGAGCCCCAUUGCUCAGGGGCCACUUCAACUGAAGGGACUU-----GA------------------GCAACUGGAGCAAAGUGCCUCUGACAAACUGGAGCAAA ................((.((((((((((((..((.((((....)))))).)))-----))------------------)))).))).))....(((.(((........)))))).. ( -31.30) >DroYak_CAF1 22452 94 - 1 ACAACUGAAUUAAUGAGCCCCAUUGCUCAAGGGCCACUUCAACCGAAGGAACUU-----GA------------------GCAACUGGAGCAAAGUGCCUCUGACAAACUGGGGCAAA ................((.((((((((((((..((..(((....)))))..)))-----))------------------)))).))).))....((((((.........)))))).. ( -33.30) >consensus ACAACUGAAUUAAUGAGCCCCAUUGCUCAAGGGCCACUUCAACCGAAGGAACUC_____GA__________________GCAACUGGAGCAAAGUGCCUCUGACAAACUGGAGCAAA ................((.((((((.(((.(((((.((((....))))...............................((.......))...).)))).))))))..))).))... (-18.38 = -18.62 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:42 2006