Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,118,185 – 5,118,300 |
Length | 115 |
Max. P | 0.625861 |
Location | 5,118,185 – 5,118,300 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.65 |
Mean single sequence MFE | -39.83 |
Consensus MFE | -29.90 |
Energy contribution | -31.77 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.08 |
Mean z-score | -1.66 |
Structure conservation index | 0.75 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5118185 115 + 27905053 ACGUAUUUUAUUCCUUUGACUUUGGUCCUGCUCUUGUCCUGCGGAAUACUUCGGGGCA-----UACUUGAGUAGUCAAAGGAGCGGAAGCCACGCGGUCGCCUAAUGAAGCGCACUUGCA ..((.......((((((((((........((((.(((((((.((....)).)))))))-----.....))))))))))))))((....)).))((((((((........))).)).))). ( -37.50) >DroSim_CAF1 20360 115 + 1 ACGUAUUUUAUUCCUUUGACUUUGGUCCUGCUCUUGUCCUGCGGAAUACCUCGGGGCA-----UACUUGAGUAGUCAAAGGAGCGGAAACCACGCGGUCGCCUAAUGAAGCGCACUGCCA .....(((..(((((((((((........((((.(((((((.((....)).)))))))-----.....)))))))))))))))..))).....((((((((........))).))))).. ( -41.80) >DroEre_CAF1 21221 120 + 1 ACGGAUUUUAUUCCUUUGACUUCGGCCGUGCUCUUGUCCUGCGGAAUACCUCAGAGUAUUGAGUACUUGAGUAGUCAAAGGAGCGGAAGCCACGCGGACGCCUAAUGAAGCACACGGCCA ..(((......))).........(((((((.....((((.(((.....(((.......((((.(((....))).))))))).((....))..)))))))((........)).))))))). ( -40.71) >DroYak_CAF1 21216 120 + 1 ACGGAUUUUAUUCCUUUGACUUUGGCCCAGCUCUUGUCCUGCCGAAUACCUCAGGGUAUUGAGUACUUGAGUAGUCAAAGGAGCGGAAGCCACGCGGUCGCCUAAUGAAGCGCACAGCCA ..((.(((..((((((((((((((((...((....))...))))))...((((((..........))))))..))))))))))..))).))..((.(((((........))).)).)).. ( -39.30) >consensus ACGGAUUUUAUUCCUUUGACUUUGGCCCUGCUCUUGUCCUGCGGAAUACCUCAGGGCA_____UACUUGAGUAGUCAAAGGAGCGGAAGCCACGCGGUCGCCUAAUGAAGCGCACUGCCA ..((.(((..(((((((((((........((((.(((((((.((....)).)))))))..........)))))))))))))))..))).))..((((((((........))).))))).. (-29.90 = -31.77 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:38 2006