Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 839,676 – 839,788 |
Length | 112 |
Max. P | 0.649833 |
Location | 839,676 – 839,788 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.74 |
Mean single sequence MFE | -25.33 |
Consensus MFE | -23.15 |
Energy contribution | -23.58 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.40 |
Structure conservation index | 0.91 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 839676 112 - 27905053 ACAAUUGCAAUUGCAUUUGCAGUGGCAAUA---ACAACUGCAGCCACAUGAGCGUACAACAGGCAAUGAAAUGGGCUUUUAAUCAAUUUCCGGUAUUAAAGUCUAGCCAAACCCA----- ...(((((((......)))))))(((....---.........(((...((......))...))).......((((((((..(((.......)))...))))))))))).......----- ( -23.20) >DroSec_CAF1 15411 115 - 1 ACAAAUGCAAUUGCAAUUGUAGUGGCAACAACAACAACUGCAGCCACAUGAGCGUACAACAGGCAAUGAAAUGGGCUUUUAAUCAAUUUCCGGUAUUAAAGUCUAGCCAAACCUA----- ((((.(((....))).)))).(((((..((........))..)))))..............(((.......((((((((..(((.......)))...))))))))))).......----- ( -24.21) >DroSim_CAF1 14636 115 - 1 ACAAAUGCAAUUGCAUUUGCAGUGGCAACAACAACAACUGCAGCCACAUGAGCGUACAACAGGCAAUGAAAUGGGCUUUUAAUCAAUUUCCGGUAUUAAAGUCUAGCCAAACCCA----- .(((((((....)))))))..(((((..((........))..)))))..............(((.......((((((((..(((.......)))...))))))))))).......----- ( -26.41) >DroEre_CAF1 16476 117 - 1 ACAAUUGCAACAGCAGUUACAGUGGCAACA---ACAAUUGCUGCCACAUGAGCGUACAGCAGGCAAUGAAAUGGGCUUUUAAUCAAUUUCCGGUAUUAAAGUCUAGCCAAACCAAGCGAC ..((((((....)))))).((((((((.((---.....)).)))))).)).((.....)).(((.......((((((((..(((.......)))...)))))))))))............ ( -27.51) >consensus ACAAAUGCAAUUGCAUUUGCAGUGGCAACA___ACAACUGCAGCCACAUGAGCGUACAACAGGCAAUGAAAUGGGCUUUUAAUCAAUUUCCGGUAUUAAAGUCUAGCCAAACCCA_____ .(((((((....)))))))..(((((..((........))..)))))..............(((.......((((((((..(((.......)))...)))))))))))............ (-23.15 = -23.58 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:10 2006