Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,117,252 – 5,117,355 |
Length | 103 |
Max. P | 0.599798 |
Location | 5,117,252 – 5,117,355 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.50 |
Mean single sequence MFE | -37.56 |
Consensus MFE | -27.45 |
Energy contribution | -28.28 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.09 |
Mean z-score | -1.64 |
Structure conservation index | 0.73 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599798 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5117252 103 - 27905053 AUGUCAGUAAGCCACAUGCGCUUGGAUUUUGACUUGUUCUCGCAUUUCGGGCAACUGUCGAAAAGGCCAACUGCCA-----------------ACCGAAUGGAUGGCGGCCAGCUGGUCA .(((((((..(((.(((.((.((((.(((((((..(((((((.....)))).))).))))))).(((.....))).-----------------.)))).)).)))..)))..))))).)) ( -34.80) >DroSec_CAF1 18844 120 - 1 AUGUCAGUAAGCCACAUGCGCUUGGAUUUGGACUUGUUCUCGCAUUUCGGCCAACAGUCGAAAAUGCCAACUGCCAUCAAAUAUGAGCAGCUAGCCGAAUGGAUGGCGGUCAGCUGGUCA (((.((((((((((.((.(....).)).))).)))......((((((((((.....)))).))))))..)))).)))......(((.(((((..(((.........)))..))))).))) ( -35.50) >DroSim_CAF1 19413 120 - 1 AUGUCAGUAAGCCACAUGCGCUUGGAUUUUGACUUGUUCUCGCAUUUCGGGCAACAGUCGAAAAUGCCAACUGCCAUCAAAUAUGAGCAGCUAGCCGAAUGGAUGGCGGUCAGCUGGUCA (((.(((((((((....).))))((.((((((((.(((((((.....)))).)))))))))))...)).)))).)))......(((.(((((..(((.........)))..))))).))) ( -38.60) >DroEre_CAF1 20334 119 - 1 AAGUCAGUUAGCCACAUGCGCU-GGAUUUCGACUUGUUCUCGCAUUCGGGGCAACAGUCGAAAAGGCCAACUGCCAUCAAAAAUGAGCAGCUGGCCAAAUGGAUGGCGGCCAGCUGGUCA ..(((((((.(((.(((.((..-...(((((((((((((.((....)))))))..)))))))).(((((.(((((((.....))).)))).)))))...)).)))..))).)))))).). ( -47.00) >DroYak_CAF1 20285 101 - 1 AUGUCAGUAAGCCACAUGCGCUUGGAUUUCGACUUGUUCUCGGAUUUGGGGCAACAGUCGAAAAGGCCAACUGCCAUCAAAUAUGAG-------------------CGGCCAGCUGGUCA .......((((((....).)))))..((((((((.((((((.......))).))))))))))).(((((.(((((.(((....))).-------------------.)).))).))))). ( -31.90) >consensus AUGUCAGUAAGCCACAUGCGCUUGGAUUUCGACUUGUUCUCGCAUUUCGGGCAACAGUCGAAAAGGCCAACUGCCAUCAAAUAUGAGCAGCU_GCCGAAUGGAUGGCGGCCAGCUGGUCA ..((((((..(((....(((.((((.((((((((.((((((.......))).)))))))))))...)))).)))...................((((......)))))))..))))).). (-27.45 = -28.28 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:33 2006