Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,116,789 – 5,116,921 |
Length | 132 |
Max. P | 0.950007 |
Location | 5,116,789 – 5,116,881 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 84.94 |
Mean single sequence MFE | -40.60 |
Consensus MFE | -31.95 |
Energy contribution | -33.73 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.03 |
Mean z-score | -2.81 |
Structure conservation index | 0.79 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5116789 92 - 27905053 GCCAAUUCUCACCUCCAAAGGAACGAAGCAAAUGGGCGGCCAUUCCGAUGGAUGAAAUCCGACGCGAUGGCCACGAUGGA-GGAUGAGA-----------AGCA ((...((((((((((((..(.......((......))(((((((.((.(((((...))))).)).))))))).)..))))-)).)))))-----------))). ( -39.10) >DroSec_CAF1 18396 104 - 1 GCCAAUUCUCACCUCCAACGGCACGGAGCAACUGAACGGCCAUUCCGAUGGAUGGCAGCCGACGCGAUGGCCAAGAUGGGGGGAUGAGAGGUGGCCUGUAAGCA ((((.(((((((((((..((((.(((.....)))....(((((((....))))))).))))..((....)).......))))).)))))).))))......... ( -41.90) >DroSim_CAF1 18958 104 - 1 GCCAAUUCUCACCUCCAACGGCACGGAGCAACUGAACGGCCAUUCCGAUGGAUGGCAACCGACGCGAUGGCCAAGAUGGGGGGAUGAGAGGUGGCCUGUAAGCA ((((.(((((((((((....((.....))........(((((((.((.(((.......))).)).)))))))......))))).)))))).))))......... ( -40.80) >consensus GCCAAUUCUCACCUCCAACGGCACGGAGCAACUGAACGGCCAUUCCGAUGGAUGGCAACCGACGCGAUGGCCAAGAUGGGGGGAUGAGAGGUGGCCUGUAAGCA ((((.((((((((((((......(((.....)))...(((((((.((.(((.......))).)).)))))))....)))).)).)))))).))))......... (-31.95 = -33.73 + 1.78)
Location | 5,116,804 – 5,116,921 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.04 |
Mean single sequence MFE | -38.88 |
Consensus MFE | -28.85 |
Energy contribution | -30.90 |
Covariance contribution | 2.05 |
Combinations/Pair | 1.07 |
Mean z-score | -1.59 |
Structure conservation index | 0.74 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5116804 117 + 27905053 AUCGUGGCCAUCGCGUCGGAUUUCAUCCAUCGGAAUGGCCGCCCAUUUGCUUCGUUC---CUUUGGAGGUGAGAAUUGGCAGCUGUUUCAUCCACUUCAGCUGCAUCAACUGGUAUGCCA ...((((((((..((..((((...))))..))..))))))))(((((..((((....---.....))))..)).....(((((((............)))))))......)))....... ( -38.90) >DroSec_CAF1 18423 117 + 1 AUCUUGGCCAUCGCGUCGGCUGCCAUCCAUCGGAAUGGCCGUUCAGUUGCUCCGUGC---CGUUGGAGGUGAGAAUUGGCAGCUGCUUCAUCCACUUCAGCUGCAUCAACUGGUAUGCCA .....((((((..((..((.......))..))..))))))..(((((((....((((---.((((.(((((.((...(((....)))...))))))))))).)))))))))))....... ( -39.20) >DroSim_CAF1 18985 117 + 1 AUCUUGGCCAUCGCGUCGGUUGCCAUCCAUCGGAAUGGCCGUUCAGUUGCUCCGUGC---CGUUGGAGGUGAGAAUUGGCAGCUGUUUCAUCCACUUCAGCUGCAUCAACUGGUAUGCCA .....((((((..((..((.......))..))..))))))..((((((((((((...---...)))))..........(((((((............)))))))..)))))))....... ( -40.10) >DroEre_CAF1 19933 114 + 1 ----UGGCCAUC--GUCCGUAUCCAUCCAUCGGAUUGGCCGCCCAAAUGCUCCGUGCCUCCGUUGGAGGUGAGAAUUGGCAGCUGUUUCAUACACUUCAGCUGCAUCAACUGGUACGCCA ----.(((((..--(((((...........))))))))))((((((...(((...((((((...)))))))))..)))(((((((............))))))).......)))...... ( -40.00) >DroYak_CAF1 19868 111 + 1 AUCUUGGCCAUC--GUCGGUUUCCAUCCAUC-------CAGCCCAGUUGCUCCUUGCCUCCGUUGGAGGUGAGAAUUGGCAGCUGUUUCAUACACUUCAGCUGCAUCAACUGGUAUUCCA .....((((...--...))))..........-------....(((((((...((..(((((...)))))..)).....(((((((............)))))))..)))))))....... ( -36.20) >consensus AUCUUGGCCAUCGCGUCGGUUUCCAUCCAUCGGAAUGGCCGCCCAGUUGCUCCGUGC___CGUUGGAGGUGAGAAUUGGCAGCUGUUUCAUCCACUUCAGCUGCAUCAACUGGUAUGCCA ....(((((((..((..((.......))..))..))))))).((((((((((((.........)))))..........(((((((............)))))))..)))))))....... (-28.85 = -30.90 + 2.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:32 2006