| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,115,435 – 5,115,538 |
| Length | 103 |
| Max. P | 0.569099 |
| Location | 5,115,435 – 5,115,538 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 88.08 |
| Mean single sequence MFE | -21.90 |
| Consensus MFE | -18.89 |
| Energy contribution | -19.00 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5115435 103 - 27905053 UUUCUUCCAUUUUUUUUUUUUUUUUGCCUUUCCAACCGGAGCCCAGG-UCCCAAGCCCAAAUACAAAUACAAAUACGGUGCAGGCGGCUUUGGCAUUCGGUUAA .................................((((((((((.(((-((((..((((..................)).)).)).))))).))).))))))).. ( -23.67) >DroSec_CAF1 17080 90 - 1 UUUCUUCCAUUUUUUUU--------------UCAACCGGAUCCCAGGAUCCCAAGCCCAAAUACAAAUACAAAUACGGUGCAGGCGGCUUUGGCAUUCGGUUAA .................--------------..((((((((.(((((..(((..((((..................)).)).)).)..))))).)))))))).. ( -20.37) >DroSim_CAF1 17609 94 - 1 UUUCUUCCAUUUUUUUUUUU---------UUCCAGCCGGAUCCCAGG-UCCCAAGCCCAAAUACAAAUACAAAUACGGUGCAGGCGGCUUUGGCAUUCGGUUAA ....................---------....((((((((((.(((-((((..((((..................)).)).)).))))).)).)))))))).. ( -21.67) >consensus UUUCUUCCAUUUUUUUUUUU_________UUCCAACCGGAUCCCAGG_UCCCAAGCCCAAAUACAAAUACAAAUACGGUGCAGGCGGCUUUGGCAUUCGGUUAA .................................((((((((.(((((.((((..((((..................)).)).)).)).))))).)))))))).. (-18.89 = -19.00 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:30 2006