Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,113,110 – 5,113,225 |
Length | 115 |
Max. P | 0.921007 |
Location | 5,113,110 – 5,113,225 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 71.24 |
Mean single sequence MFE | -20.37 |
Consensus MFE | -8.84 |
Energy contribution | -10.15 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.12 |
Mean z-score | -2.49 |
Structure conservation index | 0.43 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5113110 115 - 27905053 CAAUUUCCAUACUUUAAUACUUAUGUAAAUUCUUAGCAGGUGUCAUACUUUAUUCAUCUUAUUUACUUAAAGCAUUAAAGUAAAGUAAAGAA-ACCCCACUUUCGAGGGCAACCGA .........(((((((((.(((..((((((.......(((((............))))).))))))...))).))))))))).......(((-(......))))..((....)).. ( -18.60) >DroSec_CAF1 14764 114 - 1 UAAUUUCCAUACUUUAAUACUUAUGAAAACGCUUAGCAGCUGUCUUACUUUAUUCAUCUUAUUUACUUAAAGCAUUAAAGUAU-GAAUCGAA-ACCCCACUUUUGGGGGCAGCCAA .......(((((((((((............(((....))).......(((((...............))))).))))))))))-).......-.(((((....)))))........ ( -21.36) >DroSim_CAF1 15313 99 - 1 UAAUUCCCAUA----------------AAUUCUUAGCAGCUGUCUUACUUUAUUCAUCUUAUUUACUUAAAGCAUUAAAGUAU-GAAUCGAAAACCCCACUUUCGGGGGCAGCCAA ...........----------------...........(((((..(((((((......(((......))).....))))))).-..........((((......)))))))))... ( -17.40) >DroYak_CAF1 16023 107 - 1 -------GUUACUUUAAUUCCUAUGAAAAUUCGUAGCAGGUGUCAUACCUUAUUCGACGCAUUUACUUAAUGAAUUAAAGUAG-CAAUCCAAAACCCACAACCCC-AAACACCAAA -------(((((((((((((((((((....))))))...(((((...........)))))...........))))))))))))-)....................-.......... ( -24.10) >consensus UAAUUUCCAUACUUUAAUACUUAUGAAAAUUCUUAGCAGCUGUCAUACUUUAUUCAUCUUAUUUACUUAAAGCAUUAAAGUAU_GAAUCGAA_ACCCCACUUUCGGGGGCAGCCAA ......................................(((((..(((((((.......................)))))))............((((......)))))))))... ( -8.84 = -10.15 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:22 2006