Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,112,950 – 5,113,070 |
Length | 120 |
Max. P | 0.800282 |
Location | 5,112,950 – 5,113,070 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.25 |
Mean single sequence MFE | -34.74 |
Consensus MFE | -30.50 |
Energy contribution | -31.70 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 0.88 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.800282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5112950 120 - 27905053 AAUAAUUGCGCCUCCGGUGCACGACUUCUGCGGAUACCACAUUACUUCCGUGGGGCAUUUAUAAUUCAGGAGUCGUGACACCGCCAACGACUUUCGAUGACUCCGACGUGCUCACAUUAC .......((((.((((((((((((((((((..(...((((.........))))..)..........))))))))))).))))).((.((.....)).)).....)).))))......... ( -36.30) >DroSec_CAF1 14604 120 - 1 AAUAAUUGCGCCUCCGGUGCACGACUUCUGCGGAUACCACAUUACUUCCGUGGGGCAUUUAUAAUUCAGGAGUCGUGACACCGCCAACAACUUUCGAUGACUGCGACGUGCUCACAUUAU .......((((.((.(((((((((((((((..(...((((.........))))..)..........))))))))))).))))((...((........))...)))).))))......... ( -34.10) >DroSim_CAF1 15153 120 - 1 AAUAAUUGCGCCUCCGGUGCACGACUUCUGCGGAUACCACAUUACUUCCGUGGGGCAUUUAUAAUUCAGGAGUCGUGACACCGCCAACGACUUUCGAUGACUGCGACGUGCUCACAUUAU .......((((.((((((((((((((((((..(...((((.........))))..)..........))))))))))).))))).((.((.....)).)).....)).))))......... ( -36.30) >DroEre_CAF1 15991 120 - 1 AAUAAUUGCGCCUCCGGCACACGACUUCUGUGGAUACCACAUUCCAUCCGUGGGGCAUUUAUAAUUCAGGAGUCGUGACACCGCCAACGACUUUCGAUGACUCCGACGUGCGCACAUUAU .(((((((((((..(((..((((((((((((((...)))).(((((....)))))............)))))))))).......((.((.....)).))...)))..).))))).))))) ( -36.00) >DroYak_CAF1 15872 120 - 1 AAUAAUGGCGCCUCCGGCACUCGACUUCUGCGGAUACCACAUAACUUCCGUGGGGCAUUUAUAAUUCAGGAGUCGUGACACCGCCAACGACUUUCGAUGACUCCGACGUGCUCACAUUAA ..(((((.((....))((((((...(((..((((............))))..))).............(((((((((....)))...((.....))..)))))))).))))...))))). ( -31.00) >consensus AAUAAUUGCGCCUCCGGUGCACGACUUCUGCGGAUACCACAUUACUUCCGUGGGGCAUUUAUAAUUCAGGAGUCGUGACACCGCCAACGACUUUCGAUGACUCCGACGUGCUCACAUUAU .......((((.((((((((((((((((((..(...((((.........))))..)..........))))))))))).))))).((.((.....)).)).....)).))))......... (-30.50 = -31.70 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:21 2006