Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,112,308 – 5,112,421 |
Length | 113 |
Max. P | 0.890499 |
Location | 5,112,308 – 5,112,421 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 89.99 |
Mean single sequence MFE | -20.42 |
Consensus MFE | -16.39 |
Energy contribution | -16.95 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.84 |
Structure conservation index | 0.80 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890499 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5112308 113 - 27905053 ---UUCUUUGGACACCUCAUCAUUCUUAACCAAUCCGACCUUGACAAUGCCACCCAUCCAAUGCCAAUCUAACCGAAAUGUGGCUGUCAAAAGUGAAGCCACAAGCCCAAAUGGCA ---....(((((........((((.((((...........)))).)))).......)))))(((((.((.....))..(((((((.(((....))))))))))........))))) ( -21.66) >DroSec_CAF1 13805 105 - 1 -----CUUUGGUCACCUCACCACUCUUAACCAAUUCGACCUUGACAAUGCCACCCAUCCAAUGCCAAUCUAACCGAAAUGUGGCUGUCAAAAGUGAAGCCAC------AAAUGGCA -----...((((......))))...........((((...((((((..(((((...((................))...)))))))))))...))))((((.------...)))). ( -21.69) >DroSim_CAF1 14360 111 - 1 -----CUUUGGUCACCUCAUCACUCUUAACCAAUUCGACCUUGACAAUGCCACCCAUCCAAUGCCAAUCUAACCGAAAUGUGGCUGUCAAAAGUGAAGCCACAAGCCCAAAUGGCA -----....((((.......................)))).....................(((((.((.....))..(((((((.(((....))))))))))........))))) ( -20.80) >DroEre_CAF1 15116 116 - 1 CCACUCCUUGGUCACCUAACCAUUCUCAACCAAAGCGACCUUGACAAUGCCACCCAUCCAAUGCCAAUCUAACCGAAAUGUGGCUGUCAAAAGUAAAGCCACAAGCCCAAAUGGCA .......((((.........((((.((((...........)))).))))........))))(((((.((.....))..(((((((...........)))))))........))))) ( -21.13) >DroYak_CAF1 15075 116 - 1 CUACUCCUUGGUCACCUAACCAUUCUCAACCAAACCGACCUUGACAAUGCCACCCAUCCAAUGCCAAUCUAACCGAAAUGUGGCUGUCAAAAGUAAAGCCACAAGCCCAAAUGACA ..........((((......((((.((((...........)))).)))).............................(((((((...........)))))))........)))). ( -16.80) >consensus ____UCUUUGGUCACCUCACCAUUCUUAACCAAUCCGACCUUGACAAUGCCACCCAUCCAAUGCCAAUCUAACCGAAAUGUGGCUGUCAAAAGUGAAGCCACAAGCCCAAAUGGCA .......((((.........((((.((((...........)))).))))........))))(((((.((.....))..(((((((...........)))))))........))))) (-16.39 = -16.95 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:20 2006