Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 838,737 – 838,856 |
Length | 119 |
Max. P | 0.652343 |
Location | 838,737 – 838,856 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.40 |
Mean single sequence MFE | -32.10 |
Consensus MFE | -23.03 |
Energy contribution | -23.84 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.03 |
Mean z-score | -1.65 |
Structure conservation index | 0.72 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652343 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 838737 119 - 27905053 UUCCAUUGCACACGUCGUGCAUCCUGGCCACAAGUGAACGCUGUCCAUAGGAUGUGUGAAUGCACAGUGAAAAACAUUGGGGGACUGUAA-AGAAAUGAUUUUAAUUGGCUUCAGCAAUA ....(((((.....(((..(((((((...(((.((....)))))...)))))))..)))..((.((((.((((.((((((....))....-...)))).)))).))))))....))))). ( -32.01) >DroSec_CAF1 14230 119 - 1 UUGAUUUGCACACGUCGUGCAUCCUGGCCACAAGAGAACCCUGGCCAUGGGAUGUGUGAUUGCACAGUGAAAAACACA-GUGAACUGUAAUAAAAAUUAUUUUAAUUGGCUUGAGCAAUA .....((((.((.((((..(((((((((((...........)))))..))))))..)))).((.((((.......(((-(....))))..(((((....))))))))))).)).)))).. ( -34.10) >DroSim_CAF1 13722 119 - 1 UUGAAUUGCACACGUCGUGCAUCCUGGCCACAAGUGAACCCUGGCCAUGGGAUGUGUGAUUGCACAGUGAAAAACACA-GUGAACUGUAAUAAAAAUUAUUUUAAUUGGCUUGAGCAAUA ....(((((.((.((((..(((((((((((...(....)..)))))..))))))..)))).((.((((.......(((-(....))))..(((((....))))))))))).)).))))). ( -36.60) >DroEre_CAF1 15733 99 - 1 UUGGAUUGCACACGUCGUGCAUCCUGACCACCACUGAACGCUGGCCACGGGAUGUGUGAAUGCACCGUGAAAAACA---------------------UAUUUUAAUUGGCUUGAGCAAUG ....(((((.((..(((..(((((((....(((........)))...)))))))..)))..((....(((((....---------------------..)))))....)).)).))))). ( -25.70) >consensus UUGAAUUGCACACGUCGUGCAUCCUGGCCACAAGUGAACCCUGGCCAUGGGAUGUGUGAAUGCACAGUGAAAAACACA_GUGAACUGUAA_AAAAAUUAUUUUAAUUGGCUUGAGCAAUA ....(((((.....(((..(((((((((((...........)))))..))))))..)))..((.((((.((((..........................)))).))))))....))))). (-23.03 = -23.84 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:08 2006