| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,110,319 – 5,110,493 |
| Length | 174 |
| Max. P | 0.999807 |
| Location | 5,110,319 – 5,110,415 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.59 |
| Mean single sequence MFE | -30.70 |
| Consensus MFE | -25.88 |
| Energy contribution | -26.92 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.03 |
| Structure conservation index | 0.84 |
| SVM decision value | 3.31 |
| SVM RNA-class probability | 0.998976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5110319 96 + 27905053 ------------------------UUGGCCGAAAAACUUGCUCUUGAAGUCCAUUUGAUUUACAAUGGAAACUUUUGUCAGAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUU ------------------------((((((((..((((((.(((((...((((((........))))))..((.((((.....)))).))..))))).))))))...))))))))..... ( -30.30) >DroSec_CAF1 11856 96 + 1 ------------------------UUGGCCGAAAAACUUGCUCUUGAAGUCCAUUUGAUUUACAAUGGAAACUUUUGUGAGAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUU ------------------------((((((((..((((((.(((((..(((...(((.(((((((.(....)..)))))))...)))..)))))))).))))))...))))))))..... ( -31.90) >DroSim_CAF1 12378 119 + 1 CUUGACUCAAUUGUAUGGGAAUGUAUUGCCGGAAAACUUGCUC-UGAAGUCCAUUUGAUUUACAAUGGAAACUUUUGUGAGAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUU .....((((((((((...(((((.(((..((((........))-)).))).)))))....))))))(....).....)))).((((((.(((((((..........))))))).)))))) ( -31.10) >DroEre_CAF1 13038 96 + 1 ------------------------UUGGGCGAAAAACUUGCUCCUGAAGUCCAUUUGAUUUACAAUGGAAACUUUUGUGAGAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUU ------------------------..((((((.....))))))...............(((((((.(....)..))))))).((((((.(((((((..........))))))).)))))) ( -27.50) >DroYak_CAF1 13069 96 + 1 ------------------------UUGGCCGAAAAACUUGCUCUUGAAGUGCAUUUGAUUUACAAUGGAAACUUUUGUGAGGAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUU ------------------------((((((((..((((((.(((((....((..(((.(((((((.(....)..)))))))...)))...))))))).))))))...))))))))..... ( -32.70) >consensus ________________________UUGGCCGAAAAACUUGCUCUUGAAGUCCAUUUGAUUUACAAUGGAAACUUUUGUGAGAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUU .........................(((((((..((((((.(((((..(((...(((.(((((((.(....)..)))))))...)))..)))))))).))))))...)))))))...... (-25.88 = -26.92 + 1.04)
| Location | 5,110,319 – 5,110,415 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.59 |
| Mean single sequence MFE | -28.44 |
| Consensus MFE | -24.58 |
| Energy contribution | -25.58 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.54 |
| Structure conservation index | 0.86 |
| SVM decision value | 4.07 |
| SVM RNA-class probability | 0.999782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5110319 96 - 27905053 AACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUCUGACAAAAGUUUCCAUUGUAAAUCAAAUGGACUUCAAGAGCAAGUUUUUCGGCCAA------------------------ .......(((((((....))))))).(((((.((((((..(((....((..((((((........)))))))))))..))).))).....))))).------------------------ ( -31.10) >DroSec_CAF1 11856 96 - 1 AACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUCUCACAAAAGUUUCCAUUGUAAAUCAAAUGGACUUCAAGAGCAAGUUUUUCGGCCAA------------------------ .......(((((((....))))))).(((((....(((((((....(((..((((((........)))))))))...))).)))).....))))).------------------------ ( -30.10) >DroSim_CAF1 12378 119 - 1 AACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUCUCACAAAAGUUUCCAUUGUAAAUCAAAUGGACUUCA-GAGCAAGUUUUCCGGCAAUACAUUCCCAUACAAUUGAGUCAAG ..((((((((((((....))))))....(((....(((((((....(((..((((((........)))))))))..-))).)))).....)))..............))))))....... ( -28.80) >DroEre_CAF1 13038 96 - 1 AACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUCUCACAAAAGUUUCCAUUGUAAAUCAAAUGGACUUCAGGAGCAAGUUUUUCGCCCAA------------------------ .......(((((((....)))))))..(((.....(((((((.(..(((..((((((........)))))))))..)))).)))).....)))...------------------------ ( -26.70) >DroYak_CAF1 13069 96 - 1 AACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUCCUCACAAAAGUUUCCAUUGUAAAUCAAAUGCACUUCAAGAGCAAGUUUUUCGGCCAA------------------------ .......(((((((....))))))).(((((.(((((((.......((((...((((........)))).))))...)))).))).....))))).------------------------ ( -25.50) >consensus AACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUCUCACAAAAGUUUCCAUUGUAAAUCAAAUGGACUUCAAGAGCAAGUUUUUCGGCCAA________________________ .......(((((((....))))))).(((((....(((((((....((((..(((((........)))))))))...))).)))).....)))))......................... (-24.58 = -25.58 + 1.00)
| Location | 5,110,335 – 5,110,454 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.57 |
| Mean single sequence MFE | -34.04 |
| Consensus MFE | -32.34 |
| Energy contribution | -32.58 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.95 |
| SVM decision value | 4.13 |
| SVM RNA-class probability | 0.999807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5110335 119 + 27905053 CUCUUGAAGUCCAUUUGAUUUACAAUGGAAACUUUUGUCAGAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUUUGAACUACAAACCGCAGUGGACUGCC-CUGCAGAAAUUUU .........((((((........))))))...(((((.((((((((((.(((((((..........))))))).)))))))............((((....)))).-))))))))..... ( -33.00) >DroSec_CAF1 11872 119 + 1 CUCUUGAAGUCCAUUUGAUUUACAAUGGAAACUUUUGUGAGAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUUUGAACUACAAACCGCAGUGGACUGCC-CUGCAGAAAUUUU (((..((((((((((........))))))..))))...)))(((((((.(((((((..........))))))).)))))))............((((.((....))-))))......... ( -34.70) >DroSim_CAF1 12418 119 + 1 CUC-UGAAGUCCAUUUGAUUUACAAUGGAAACUUUUGUGAGAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUUUGAACUACAAACCGCAGUGGACUGCCCCUGUAGAAAUUUU (((-.((((((((((........))))))..))))...)))(((((((.(((((((..........))))))).)))))))...(((((....((((....))))...)))))....... ( -36.00) >DroEre_CAF1 13054 119 + 1 CUCCUGAAGUCCAUUUGAUUUACAAUGGAAACUUUUGUGAGAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUUUGAACUAAAAACCGCAGUGGACUGCC-CUGCAGAAAUUUC ...(((.((((((((((.(((((((.(....)..)))))))(((((((.(((((((..........))))))).)))))))...........)).))))))))...-...)))....... ( -36.00) >DroYak_CAF1 13085 119 + 1 CUCUUGAAGUGCAUUUGAUUUACAAUGGAAACUUUUGUGAGGAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUUUGAACUAAAAACCGCAGUGGACUGUC-CUGCAGAAAUUUU .(((...(((.(......(((((((.(....)..)))))))(((((((.(((((((..........))))))).)))))))).))).......((((.((....))-)))))))...... ( -30.50) >consensus CUCUUGAAGUCCAUUUGAUUUACAAUGGAAACUUUUGUGAGAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUUUGAACUACAAACCGCAGUGGACUGCC_CUGCAGAAAUUUU .......((((((((((.(((((((.(....)..)))))))(((((((.(((((((..........))))))).)))))))...........)).))))))))................. (-32.34 = -32.58 + 0.24)
| Location | 5,110,335 – 5,110,454 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.57 |
| Mean single sequence MFE | -31.00 |
| Consensus MFE | -25.52 |
| Energy contribution | -26.72 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.782187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5110335 119 - 27905053 AAAAUUUCUGCAG-GGCAGUCCACUGCGGUUUGUAGUUCAAACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUCUGACAAAAGUUUCCAUUGUAAAUCAAAUGGACUUCAAGAG ..(((((.(((((-(((((((((.....(((((.....)))))....(((((((....))))))).)))...))))).)))).)).)))))((((((........))))))......... ( -34.20) >DroSec_CAF1 11872 119 - 1 AAAAUUUCUGCAG-GGCAGUCCACUGCGGUUUGUAGUUCAAACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUCUCACAAAAGUUUCCAUUGUAAAUCAAAUGGACUUCAAGAG ......(((((((-.((((....)))).(((((.....)))))....(((((((..........)))))))..))))..............((((((........)))))).....))). ( -32.90) >DroSim_CAF1 12418 119 - 1 AAAAUUUCUACAGGGGCAGUCCACUGCGGUUUGUAGUUCAAACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUCUCACAAAAGUUUCCAUUGUAAAUCAAAUGGACUUCA-GAG ......(((..((((((((((((.....(((((.....)))))....(((((((....))))))).)))...)))))))))..........((((((........))))))....)-)). ( -33.50) >DroEre_CAF1 13054 119 - 1 GAAAUUUCUGCAG-GGCAGUCCACUGCGGUUUUUAGUUCAAACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUCUCACAAAAGUUUCCAUUGUAAAUCAAAUGGACUUCAGGAG .........((((-.((((....))))......(((..(((......(((((((....))))))))))..)))))))..(((.(..(((..((((((........)))))))))..)))) ( -31.30) >DroYak_CAF1 13085 119 - 1 AAAAUUUCUGCAG-GACAGUCCACUGCGGUUUUUAGUUCAAACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUCCUCACAAAAGUUUCCAUUGUAAAUCAAAUGCACUUCAAGAG ......(((((((-.........))))(((((.((((..((((....(((((((....)))))))..(((.....)))..........))))..)))).)))))............))). ( -23.10) >consensus AAAAUUUCUGCAG_GGCAGUCCACUGCGGUUUGUAGUUCAAACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUCUCACAAAAGUUUCCAUUGUAAAUCAAAUGGACUUCAAGAG .........((((..((((....)))).(((((.....)))))....(((((((..........)))))))..))))..(((....((((..(((((........)))))))))...))) (-25.52 = -26.72 + 1.20)
| Location | 5,110,375 – 5,110,493 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.96 |
| Mean single sequence MFE | -35.08 |
| Consensus MFE | -33.08 |
| Energy contribution | -32.08 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.94 |
| SVM decision value | 3.15 |
| SVM RNA-class probability | 0.998578 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5110375 118 + 27905053 GAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUUUGAACUACAAACCGCAGUGGACUGCC-CUGCAGAAAUUUUCUGGA-AUUUGUGCAAGAAGUUUGUGCUUUUGUGUGAAAU .(((((((.(((((((..........))))))).)))))))(((.(((((((.((((....)))).-.((((.((((((....))-)))).))))....))))))).))).......... ( -36.80) >DroSec_CAF1 11912 118 + 1 GAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUUUGAACUACAAACCGCAGUGGACUGCC-CUGCAGAAAUUUUCUGGA-AUUUGUGCAAGAAGUUUGUGCUUUUGUGUGAAAU .(((((((.(((((((..........))))))).)))))))(((.(((((((.((((....)))).-.((((.((((((....))-)))).))))....))))))).))).......... ( -36.80) >DroSim_CAF1 12457 119 + 1 GAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUUUGAACUACAAACCGCAGUGGACUGCCCCUGUAGAAAUUUUCUGGA-AUUUGUGCAAGAAGUUUGUGCUUUUGUGUGAAAU .(((((((.(((((((..........))))))).)))))))(((.(((((((.((((....))))...((((.((((((....))-)))).))))....))))))).))).......... ( -34.80) >DroEre_CAF1 13094 118 + 1 GAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUUUGAACUAAAAACCGCAGUGGACUGCC-CUGCAGAAAUUUCCUGGA-AUUUGUGCGAAGAGUUUGUGCUUUUGUGUGAAAU .(((((((.(((((((..........))))))).)))))))............((((....)))).-.((((.((((((....))-)))).))))((((((....))))))......... ( -34.40) >DroYak_CAF1 13125 119 + 1 GGAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUUUGAACUAAAAACCGCAGUGGACUGUC-CUGCAGAAAUUUUCUGGAAAUUUGUGCGAAGAGUUUGUGCUUUUGUGUGAAAU .(((((((.(((((((..........))))))).)))))))............((.(..((((.(.-.((((.(((((((...))))))).)))).).))))..)))............. ( -32.60) >consensus GAAGCAGUAGGCCAAGACCAAGUUAACUUGGCCAAUUGUUUGAACUACAAACCGCAGUGGACUGCC_CUGCAGAAAUUUUCUGGA_AUUUGUGCAAGAAGUUUGUGCUUUUGUGUGAAAU .(((((((.(((((((..........))))))).)))))))..........((((((.((....)).))))(((.....)))))...((..((((.(((((....)))))))))..)).. (-33.08 = -32.08 + -1.00)
| Location | 5,110,375 – 5,110,493 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.96 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -23.80 |
| Energy contribution | -24.64 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5110375 118 - 27905053 AUUUCACACAAAAGCACAAACUUCUUGCACAAAU-UCCAGAAAAUUUCUGCAG-GGCAGUCCACUGCGGUUUGUAGUUCAAACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUC ...........(((((.(((((.((((((.((((-(......))))).)))))-)((((....)))))))))((((..(((......(((((((....))))))))))..))))))))). ( -35.10) >DroSec_CAF1 11912 118 - 1 AUUUCACACAAAAGCACAAACUUCUUGCACAAAU-UCCAGAAAAUUUCUGCAG-GGCAGUCCACUGCGGUUUGUAGUUCAAACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUC ...........(((((.(((((.((((((.((((-(......))))).)))))-)((((....)))))))))((((..(((......(((((((....))))))))))..))))))))). ( -35.10) >DroSim_CAF1 12457 119 - 1 AUUUCACACAAAAGCACAAACUUCUUGCACAAAU-UCCAGAAAAUUUCUACAGGGGCAGUCCACUGCGGUUUGUAGUUCAAACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUC ...........(((((.((((((((((...((((-(......)))))...)))))((((....)))))))))((((..(((......(((((((....))))))))))..))))))))). ( -29.20) >DroEre_CAF1 13094 118 - 1 AUUUCACACAAAAGCACAAACUCUUCGCACAAAU-UCCAGGAAAUUUCUGCAG-GGCAGUCCACUGCGGUUUUUAGUUCAAACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUC ...........(((((.((((((((.(((.((((-(......))))).)))))-)((((....))))))))).(((..(((......(((((((....))))))))))..))).))))). ( -27.50) >DroYak_CAF1 13125 119 - 1 AUUUCACACAAAAGCACAAACUCUUCGCACAAAUUUCCAGAAAAUUUCUGCAG-GACAGUCCACUGCGGUUUUUAGUUCAAACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUCC ............((((.......................(((.....((((((-.........)))))).......)))........(((((((..........)))))))...)))).. ( -24.00) >consensus AUUUCACACAAAAGCACAAACUUCUUGCACAAAU_UCCAGAAAAUUUCUGCAG_GGCAGUCCACUGCGGUUUGUAGUUCAAACAAUUGGCCAAGUUAACUUGGUCUUGGCCUACUGCUUC ...........(((((((((((...............(((((...))))).....((((....))))))))))).............(((((((..........)))))))....)))). (-23.80 = -24.64 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:14 2006