Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,104,355 – 5,104,504 |
Length | 149 |
Max. P | 0.776320 |
Location | 5,104,355 – 5,104,467 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.67 |
Mean single sequence MFE | -29.25 |
Consensus MFE | -21.17 |
Energy contribution | -22.93 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.09 |
Mean z-score | -2.02 |
Structure conservation index | 0.72 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5104355 112 + 27905053 AAC--------CAGACAAAAAAUAUAUCAUGCAUGCGAAAGCAUAUGGGUAACUGAAACUGCAAGAGUUGUUAUACAAUUAUAGCUGGCUUUGCUGGCUAACUGGUUGGCUCUUAAAGUA (((--------(((......((((..((.(((((((....))))...(((.......)))))).))..)))).........((((..((...))..)))).))))))............. ( -28.80) >DroSec_CAF1 11128 112 + 1 AAC--------CAGCCAAAAAAUACAUCAUGCAUGCGAUAGCAUAUGGGUAACUGAAACUGCAAGAGUUGUUAUACAAUUAUAGCCGGGUUUGCUGGCUAACUGGUUGGCUCUUAAAGUA ..(--------((((((...((((..((.(((((((....))))...(((.......)))))).))..)))).........(((((((.....)))))))..)))))))........... ( -29.30) >DroSim_CAF1 11366 112 + 1 AUC--------CAGACAAAAAAUACAUCAUGCAUGCGAAAGCAUAUGGGUAACUGAAACUGCAAGAGUUGUUAUACAAUUAUAGCCGGGUUUGCUGGCUAACUGGUUGGCUCUUAAAGUA ...--------...........(((.((((..((((....)))))))))))......(((..((((((.......(((((((((((((.....)))))))..))))))))))))..))). ( -29.01) >DroEre_CAF1 12263 112 + 1 AAG--------CAGACAAAAAAUACAUCAUGCAUGCGAAAGCAUAUGGGUAACUGAAACUGCAAGAGUUGUUAUGCAAUUAUAGCUGGCUUUUGGAGCUAACCGGUUGGCUCUUAAAGUG ..(--------(((........(((.((((..((((....))))))))))).......))))...((((((.........)))))).(((((.((((((((....)))))))).))))). ( -32.06) >DroYak_CAF1 12308 110 + 1 AACCAGACAACCAGACAAAAAAUACAUCAUGCAUGCGCAAGCAUAUGGGUAACUGAAACUGCAAGAGUUGUUAUGCAAUUAUUGCUGGCUGUG----------GGUUGGCUCUUAAAGUA ((((..(((.((((.(((..............((((....)))).((.(((((...((((.....))))))))).))....))))))).))).----------))))............. ( -27.10) >consensus AAC________CAGACAAAAAAUACAUCAUGCAUGCGAAAGCAUAUGGGUAACUGAAACUGCAAGAGUUGUUAUACAAUUAUAGCUGGCUUUGCUGGCUAACUGGUUGGCUCUUAAAGUA ......................(((.((((..((((....)))))))))))......(((..((((((.......(((((((((((((.....)))))))..))))))))))))..))). (-21.17 = -22.93 + 1.76)
Location | 5,104,387 – 5,104,504 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.88 |
Mean single sequence MFE | -25.73 |
Consensus MFE | -20.21 |
Energy contribution | -21.81 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.12 |
Mean z-score | -1.77 |
Structure conservation index | 0.79 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.776320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5104387 117 + 27905053 GCAUAUGGGUAACUGAAACUGCAAGAGUUGUUAUACAAUUAUAGCUGGCUUUGCUGGCUAACUGGUUGGCUCUUAAAGUAGUUACACAAAACUGGCAAUAAAAACAA-AAA--AAAAAGA ((...((.((((((...(((..((((((.......((((((((((..((...))..))))..))))))))))))..))))))))).))......))...........-...--....... ( -26.11) >DroSec_CAF1 11160 119 + 1 GCAUAUGGGUAACUGAAACUGCAAGAGUUGUUAUACAAUUAUAGCCGGGUUUGCUGGCUAACUGGUUGGCUCUUAAAGUAGUUACACAAAACUGGCAAUAAAAACAA-AAACAAUAAAGA ((...((.((((((...(((..((((((.......(((((((((((((.....)))))))..))))))))))))..))))))))).))......))...........-............ ( -26.81) >DroSim_CAF1 11398 120 + 1 GCAUAUGGGUAACUGAAACUGCAAGAGUUGUUAUACAAUUAUAGCCGGGUUUGCUGGCUAACUGGUUGGCUCUUAAAGUAGUUACACAAAACUGGCAAUAAAAAUAAAAAACAAAAAAGA ((...((.((((((...(((..((((((.......(((((((((((((.....)))))))..))))))))))))..))))))))).))......))........................ ( -26.81) >DroEre_CAF1 12295 120 + 1 GCAUAUGGGUAACUGAAACUGCAAGAGUUGUUAUGCAAUUAUAGCUGGCUUUUGGAGCUAACCGGUUGGCUCUUAAAGUGGUUACACAAAACUGGCAAUAAAAGAACAAAACAAAAAGAA ((...((.((((((....(.((...(((((.....)))))...)).)(((((.((((((((....)))))))).))))))))))).))......))........................ ( -27.80) >DroYak_CAF1 12348 105 + 1 GCAUAUGGGUAACUGAAACUGCAAGAGUUGUUAUGCAAUUAUUGCUGGCUGUG----------GGUUGGCUCUUAAAGUAGUUGCACAAAACGGGCAAUAAAAGAAUAA-----AAAAGA .....((.(((((...((((.....))))))))).)).((((((((.(.((((----------.(...(((.....)))...).))))...).))))))))........-----...... ( -21.10) >consensus GCAUAUGGGUAACUGAAACUGCAAGAGUUGUUAUACAAUUAUAGCUGGCUUUGCUGGCUAACUGGUUGGCUCUUAAAGUAGUUACACAAAACUGGCAAUAAAAAAAAAAAACAAAAAAGA ((...((.((((((...(((..((((((.......(((((((((((((.....)))))))..))))))))))))..))))))))).))......))........................ (-20.21 = -21.81 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:09 2006