Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,102,396 – 5,102,507 |
Length | 111 |
Max. P | 0.786457 |
Location | 5,102,396 – 5,102,507 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.36 |
Mean single sequence MFE | -28.89 |
Consensus MFE | -17.00 |
Energy contribution | -17.60 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.36 |
Structure conservation index | 0.59 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786457 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5102396 111 + 27905053 CCCUCUGAGUCCAUCUGGCCAACAUGUGUGUGUGUGUGUAUUUGACGCUCCUCACGCACCAAAAAAAAGGAACAUGUAUAUG------UAUUUAUAU---UAAGGCAGAGCAAAAAAAAA ..((((((.....))..(((.(((((((((((.(.((((.....)))).)..))))).((........)).))))))(((((------....)))))---...))))))).......... ( -24.80) >DroSec_CAF1 9130 102 + 1 CCCUCUGGGUCCAUCUGGCCAACAUGUGU------GUGUAUUUGACGCUACUCACGCACCAAAAAAAAGGAACAUGUAAAUG------UAUUUAUAUA--UAAGGCAGAGCAAAAA---- ..(((((((((.....)))).((((((((------(((..............))))).((........)).))))))...((------(((....)))--))...)))))......---- ( -22.14) >DroSim_CAF1 9361 105 + 1 CCCUCUGGGUCCAUCUGGCCAACAUGUGUG----UGUGUAUUUGACGCUACUCACGCACCAAAAAAAA-GAACUUGUAUAUG------UAUUUAUAUA--UAAGGCAGAGCAAAAAAA-- ..(((((((((.....)))).....(((((----((.(((........))).))))))).........-...((((((((((------....))))))--)))).)))))........-- ( -30.40) >DroEre_CAF1 9408 106 + 1 CCCUCUGGGUCCAGCUGGCCAACUUGGGUG--UGUGUGUAUUUGACGCUCCUCACGCACCAAAAAAA-GAAA----UAUAUGUAUAUGUAUUUACAUG--UAUGGCAGAGCAAAA----- (((...)))....(((.(((...(((((((--((.((((.....))))....))))).)))).....-...(----((((((((........))))))--))))))..)))....----- ( -32.20) >DroYak_CAF1 10311 114 + 1 CCCUCUGGGUCCAUCUGGCCAACAUGUGUGUGUGUGUGUAUUUGACGCUCCUCACGCACCAAAAAAA-GAAACACGUAUAUGUAUUUAUAUAUAUAUGUAUAUGGCAGAGCAAAA----- ..(((((((((.....))))..((((((((((((.((((.....))))....)))))))........-.....(((((((((((....)))))))))))))))).))))).....----- ( -34.90) >consensus CCCUCUGGGUCCAUCUGGCCAACAUGUGUG__UGUGUGUAUUUGACGCUCCUCACGCACCAAAAAAAAGGAACAUGUAUAUG______UAUUUAUAUA__UAAGGCAGAGCAAAAA____ ..(((((((((.....))))....((((((.....((((.....))))....))))))...............................................))))).......... (-17.00 = -17.60 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:02 2006