Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,102,237 – 5,102,356 |
Length | 119 |
Max. P | 0.789549 |
Location | 5,102,237 – 5,102,356 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.07 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -31.24 |
Energy contribution | -31.00 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.23 |
Structure conservation index | 0.97 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789549 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5102237 119 + 27905053 AACACACGCGUGGCAGGAUUACCCUCUUAAAGGUAAUGAUGACGACUUUCGGCCCCAACGAGUUGGAAAAUAGACGUGAAUCCCGCUUGCCGAGCAAAAA-CGCUGAAAAAGCGAAGAGA .......((((.(((..((((((........))))))..)).).))..(((((.((((....)))).........(((.....)))..))))))).....-((((.....))))...... ( -30.80) >DroSec_CAF1 8971 119 + 1 AACACACGCGUGGCAGGAUUACCCUCUUAAAGGUAAUGAUGACGACUUUCGGCCCCAACGAGUUGGAAAAUAGACGUGAAUCAAGCUUGCCGAGCAAAAA-CGCUGGAAAAGCGAAGCGA ......(((.(((((((((((((........))))))(((.(((.((.......((((....)))).....)).)))..)))...)))))))........-((((.....))))..))). ( -32.20) >DroSim_CAF1 9202 119 + 1 AACACACGCGUGGCAGGAUUACCCUCUUAAAGGUAAUGAUGACGACUUUCGGCCCCAACGAGUUGGAAAAUAGACGUGAAUCAAGCUUGCCGAGCAAAAA-CGCUGGAAAAGCGAAGCGA ......(((.(((((((((((((........))))))(((.(((.((.......((((....)))).....)).)))..)))...)))))))........-((((.....))))..))). ( -32.20) >DroEre_CAF1 9249 119 + 1 AACACACGCGUGGCAGGAUUACCGUCUUAAAGGUAAUGAUGACGACUUUCGGCCCCAACGAGUUGGAAAAUAGACGUGAAUCCAGCUUGCCAAGCAAAAA-CGCUGGAAAAGCGAAGCGA ......(((.((((((((((..(((((....(((...((.........)).)))((((....)))).....)))))..)))))....)))))........-((((.....))))..))). ( -33.60) >DroYak_CAF1 10151 120 + 1 AACACACGCGUGGCAGGAUUACCCUCUUAAAGGUAAUGAUGACGACUUUCGGCCCCAACGAGUUGGAAAAUAGACGUGAAUCAGGCUUGCCAAGCAAAAAGCGCUGGAAAAGCGAAGCGA ......(((.(((((((((((((........))))))(((.(((.((.......((((....)))).....)).)))..)))...))))))).........((((.....))))..))). ( -32.60) >consensus AACACACGCGUGGCAGGAUUACCCUCUUAAAGGUAAUGAUGACGACUUUCGGCCCCAACGAGUUGGAAAAUAGACGUGAAUCAAGCUUGCCGAGCAAAAA_CGCUGGAAAAGCGAAGCGA .......((.(((((((((((((........))))))(((.(((.((.......((((....)))).....)).)))..)))...))))))).))......((((.....))))...... (-31.24 = -31.00 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:01 2006