Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,098,567 – 5,098,661 |
Length | 94 |
Max. P | 0.860868 |
Location | 5,098,567 – 5,098,661 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.57 |
Mean single sequence MFE | -28.04 |
Consensus MFE | -10.16 |
Energy contribution | -9.56 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.28 |
Mean z-score | -1.98 |
Structure conservation index | 0.36 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5098567 94 + 27905053 AUUCACAUUGUAUU--------------------CAUUCA-UCCACGUUUAUUCAACGUU--UUUGUGAAUAACCCUUUGGCGGCCC-AAAAUGCGGGCUGGCUUAAAGGA--CAAGAAC .(((......((((--------------------(((...-...(((((.....))))).--...)))))))..(((((((((((((-.......))))).)).)))))).--...))). ( -25.20) >DroSec_CAF1 5636 95 + 1 AUUCACAUUGUAUU--------------------CAUUCA-UCCGCAUUCAUUGUACGUU--UUUGUGAAUAACCCUUUGGCGAACCCAAAAUGCGGGCUGGCUUAAAGGA--CAAGAUC (((((((.(((((.--------------------......-............)))))..--..)))))))...((((((((.(.(((.......))).).)).)))))).--....... ( -21.01) >DroSim_CAF1 5612 94 + 1 AUUCACGUUGUAUU--------------------CAUUCA-UCCACAUUCAUUGUACGUU--UUUGUGAAUAACCCUUUGGCAAGCC-UAAAUGCUGGCUGGCUUAAAGGA--CAAGAUC (((((((.(((((.--------------------......-............)))))..--..)))))))...((((((((.((((-........)))).)).)))))).--....... ( -22.31) >DroEre_CAF1 5666 117 + 1 AUUCACAACAGAUUGAGGUGGCACAUGAGUGCUACAUUCGUUCUGCAUUCAUUCUAUGGUCCUUUGUGAAUAACCCUUUGGUGGCCC-GAAAUGCGGGCUGGUCCAAAGGA--CAAGAUC ((((((((((((.(((((((((((....))))))).)))).))))(((.......))).....))))))))...(((((((.(((((-(.....))))))...))))))).--....... ( -46.00) >DroYak_CAF1 6420 115 + 1 AUUCACUUCAGAUUGAGCUG--ACAUGAGUGCUACACUCGUUCUACAUUCAUUCUAUGUU--UUUGUGAAUAACCCUUCGGCGACCC-AAAAUGCGGGCUGGUCCAAAGGAUUCAAGAUC ((((((...(((.((((..(--(.(((((((...)))))))))....)))).))).....--...))))))...((((.(((.((((-.......))).).).)).)))).......... ( -25.70) >consensus AUUCACAUUGUAUU____________________CAUUCA_UCCACAUUCAUUCUACGUU__UUUGUGAAUAACCCUUUGGCGACCC_AAAAUGCGGGCUGGCUUAAAGGA__CAAGAUC (((((((.........................................................)))))))...((((((((.(.((.........)).).).))))))).......... (-10.16 = -9.56 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:52 2006