| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 838,393 – 838,511 |
| Length | 118 |
| Max. P | 0.571954 |
| Location | 838,393 – 838,511 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.44 |
| Mean single sequence MFE | -36.43 |
| Consensus MFE | -30.44 |
| Energy contribution | -31.00 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.571954 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 838393 118 - 27905053 AAUUAUAACGAGUAUAAUGAACCCACACAUUGGG-GGUGGAGGGCG-CAUAAGCUCUUUGGCAACGGAGGGCGAGUUCCCUCCAACUAAUUAGCAUGCCGAAAUGUGGCUAAUAUGGCAA ........((.((((..(((.((((.....))))-(((((((((.(-(....((((((((....))))))))..)).)))))).)))..)))..)))))).......(((.....))).. ( -40.80) >DroSec_CAF1 13871 120 - 1 AAUUAUAACGAGUAUAAUGAACCCACACAUAGGGUGGUGGAGGGCAACAAAAGCUCUUUGGCAGCGGAGGGCGAGUUACCUCCAACUAAUUAGCAUGCCGAAAUGUGGCUAAUAUGGCUA ........((.((((..(((((((.......))))((((((((..(((....((((((((....))))))))..))).))))).)))..)))..)))))).....(((((.....))))) ( -35.00) >DroSim_CAF1 13363 120 - 1 AAUUAUAACGAGUAUAAUGAACCCACACUUAGGGUGGUGGAGGGCAACAAAAGCUCUUUGGCAGUGGAGGGCGAGUUACCUCCAACUAAUUAGCAUGCCGAAAUGUGGCUAAUAUGGCUA .........((((........(((.((((......))))..)))........))))(((((((.((((((........))))))...........)))))))...(((((.....))))) ( -33.49) >consensus AAUUAUAACGAGUAUAAUGAACCCACACAUAGGGUGGUGGAGGGCAACAAAAGCUCUUUGGCAGCGGAGGGCGAGUUACCUCCAACUAAUUAGCAUGCCGAAAUGUGGCUAAUAUGGCUA ........((.((((..(((((((.......))))((((((((..(((....((((((((....))))))))..))).))))).)))..)))..)))))).....(((((.....))))) (-30.44 = -31.00 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:05 2006