Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,096,524 – 5,096,637 |
Length | 113 |
Max. P | 0.979863 |
Location | 5,096,524 – 5,096,637 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.11 |
Mean single sequence MFE | -41.84 |
Consensus MFE | -33.19 |
Energy contribution | -35.31 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.06 |
Mean z-score | -2.43 |
Structure conservation index | 0.79 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.979863 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5096524 113 + 27905053 UGCCGGCCGAGCUGUAAGUAGUUGACAUUGCUCCUAAACACGUUUGCCAGCCGCAGAGA-GA-----CGAAGAAUGGGAGGCUGGAAAAUGUGACU-GCAGGGGAAGCCAAGCUGGCAAC (((((((....(((((((((((....))))))......(((((((.((((((.......-..-----............)))))).)))))))..)-))))((....))..))))))).. ( -40.20) >DroSec_CAF1 3658 119 + 1 UGCCGGCCGGGCUGUAAGUAGUUGACAUUGCCCCUAAACACGUUUGCCAGCCGCAGAGAAGAUGAAGAGAAGAAUGGGAGGCUGGAAAAUGUGACU-GUGGGGGAAGCCAUGCUGGCAAC (((((((..((((....((.....))....((((((..(((((((.((((((...........................)))))).)))))))...-.)))))).))))..))))))).. ( -46.83) >DroSim_CAF1 3657 119 + 1 UGCCGGCCGGGCUGUAAGUAGUUGACAUAGCCCCUAAACACGUUUGCCAGCCGCAGAGAAGAUGAAGAGAAGAAUGGGAGGCUGGAAAAUGUGACU-GCGGGGGAAGCCAUGCUGGCAAC (((((((..((((....((.....))....(((((...(((((((.((((((...........................)))))).)))))))...-..))))).))))..))))))).. ( -44.43) >DroEre_CAF1 3655 103 + 1 UGCC----GGGCUGUAAGUAGUUGACAUUGCCCCUAAACACGUUUGCCAGCCGCAGAGAA-A-----------CCGGGGGGCUGGCAAAUGUGACU-GCGGGGGAAGCCGUGCUGGCAAC ((((----(((((((.........)))..)))).....((((((((((((((.(...(..-.-----------.)..).))))))))))))))...-(((.((....)).))).)))).. ( -47.40) >DroYak_CAF1 3714 98 + 1 UGCC----GGGCUGUAAGUAGUUGACAUUGCCCCUAAACACGUUUGCCAGCCGCAAAAGA-A-----------U-----GGCUAA-AAAGGAGGCUGGCUGGGGAAGCCAUGCUGGCAAC ((((----((((((....))))...(((.(((((((.........(((((((........-.-----------.-----......-......))))))))))))..)).))))))))).. ( -30.35) >consensus UGCCGGCCGGGCUGUAAGUAGUUGACAUUGCCCCUAAACACGUUUGCCAGCCGCAGAGAAGA______GAAGAAUGGGAGGCUGGAAAAUGUGACU_GCGGGGGAAGCCAUGCUGGCAAC (((((((..((((....((.....))....(((((...(((((((.((((((...........................)))))).)))))))......))))).))))..))))))).. (-33.19 = -35.31 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:47 2006