Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,095,634 – 5,095,725 |
Length | 91 |
Max. P | 0.500000 |
Location | 5,095,634 – 5,095,725 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 74.63 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -10.86 |
Energy contribution | -11.70 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.22 |
Mean z-score | -1.94 |
Structure conservation index | 0.40 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5095634 91 - 27905053 UCAAAGAGACUGUGCACAUCACGCUGCUCGAAGGCGGAAUCUAUGGCUUCGUUAAAUAGGCUAUCAAAA-AGAAAGUUGUG------------CUACCGUUAAA .......(((.(((((((.(...(((((....)))))..((((((((((........))))))).....-)))..).))))------------).)).)))... ( -19.90) >DroPse_CAF1 3520 104 - 1 UCGUAGAGGCUGUGCAGAUCCCGCUGCUCGAAGGCGCAGUCGAUGGCCUCCUCGAAAUAGCUAAAGGAGAUUGAAGGUAUACAAUAUAAGAUCUUUCAGUGCAU (((..((((((((...(((..((((.......))))..))).))))))))..)))....((....(((((((....((((...))))..)))))))....)).. ( -29.70) >DroSim_CAF1 2795 91 - 1 UCAAACAGACUGUGCACAUCACGCUGCUCGAAGGCGGAAUCUAUGGCUUCGUUAAAUAGGCUAUCGAAA-AGAAAGUUGUG------------CUUCAGUUAAA .......(((((.(((((.(...(((((....)))))..((.(((((((........))))))).))..-.....).))))------------)..)))))... ( -24.60) >DroEre_CAF1 2786 91 - 1 UCAAAGAGACUGUGCACAUCCCGCUGCUCGAAGGCGGAAUCUAUGGCUUCGUUAAAUAAGCUAUCGAAA-AGAAAGUUGUG------------CUACAGUUAAA .......(((((((((((..(((((.......)))))..((.(((((((........))))))).))..-.......))))------------).))))))... ( -28.60) >DroYak_CAF1 2798 91 - 1 UCAAAGAGACUGUGCACAUCCCGCUGCUCGAAGGCGGAAUCAAUGGCUUCGUGAAAUAAGCUAUCGAAA-AGAAAGUUGUG------------CUACAGUUAAG .......(((((((((((..(((((.......)))))..((.(((((((........))))))).))..-.......))))------------).))))))... ( -28.60) >DroPer_CAF1 3498 104 - 1 UCGUAGAGGCUAUGCAGAUCCCGCUGCUCGAAGGCGCAGUCGAUGGCCUCCUCGAAAUAGCUAAAGGAGAUUAAAGGUAUACAAUAUAAGAUCUUUUAGUGCAU (((..((((((((...(((..((((.......))))..))).))))))))..)))....(((((((((..(((...(....)....)))..))))))))).... ( -32.80) >consensus UCAAAGAGACUGUGCACAUCCCGCUGCUCGAAGGCGGAAUCUAUGGCUUCGUUAAAUAAGCUAUCGAAA_AGAAAGUUGUG____________CUACAGUUAAA .......(((((.........((((.......))))...((.(((((((........))))))).)).............................)))))... (-10.86 = -11.70 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:46 2006