Locus 1764

Sequence ID 3R_DroMel_CAF1
Location 5,085,735 – 5,085,846
Length 111
Max. P 0.715957
window2897

overview

Window 7

Location 5,085,735 – 5,085,846
Length 111
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 84.32
Mean single sequence MFE -37.81
Consensus MFE -28.68
Energy contribution -29.68
Covariance contribution 1.01
Combinations/Pair 1.28
Mean z-score -2.25
Structure conservation index 0.76
SVM decision value 0.39
SVM RNA-class probability 0.715957
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5085735 111 - 27905053
CUCGGCUCGCGCCUUUUCCGCUCGCAAUGCAGCUAAACCAUUUCUUGGCCUGGCCUCGAUGAUCGUCGCCGAUCCAUUGGCUAAGUCAUCCGGGUUUUGCUGCAAUAUGUA
...(((....)))..........(((.((((((.(((((......((((.(((((.....(((((....)))))....))))).))))....))))).))))))...))). ( -38.20)
>DroSec_CAF1 12596 111 - 1
CUCGGCUCGCACCUUUUCUGCUCGCAAUGCAGCUAAGCCAUUUCUUGGCCUGGCCUCGAUGAUCGUCGCCGAUCCAUUGGCCAAGUCAUCCGGGUUUUGCUGCAAUAUGUA
....((..(((.......)))..))..((((((.(((((......((((.(((((.....(((((....)))))....))))).))))....))))).))))))....... ( -39.60)
>DroSim_CAF1 12687 111 - 1
CUCGGCUCGCACCUUUUCUGCUCGCAAUGCAGCUAAGCCAUUUCUUGGCCUGGCCUCGAUGAUCGUCGCCGAUCCAUUGGCCAAGUCAUCCGGGUUUUGCUGCAAUAUGUA
....((..(((.......)))..))..((((((.(((((......((((.(((((.....(((((....)))))....))))).))))....))))).))))))....... ( -39.60)
>DroEre_CAF1 17503 111 - 1
CUCUGCUCGCGCCUUCUCCGCUCGCAAUGCAGCUAAACCACUUCUGGGCCUGGCCUCGAUGAUCGUCGCCGAUCCGUUGGCCAAGUCAUCCACGUUAUGCUGCAAUAUGUA
...(((..(((.......)))..))).((((((..(((........(((.(((((.((..(((((....)))))))..))))).)))......)))..))))))....... ( -34.04)
>DroYak_CAF1 15193 111 - 1
CUCCGCUCGCGCCUUUUCCGCUCGCAAUGCAGCUAAACCAUUCCUGGGCCUGGCCUCGAUGAUCGUGGCCGAUCCGUUGGCCAUGUCAUCCGGGUUGUGCUGCAAUAUGUA
....((..(((.......)))..))..((((((....(((....)))....(((((.(((((.(((((((((....)))))))))))))).)))))..))))))....... ( -43.50)
>DroAna_CAF1 10468 108 - 1
UUCUGCCCGUGCCUUCUCUGCUCGCAAGGAGGCUAAAUUGCUUUUGGGCCUGGCCACAA---UAGUGGCUGCUUCUUGAACCCCGUCAUCCAGAUUUUCCGGGAUUAUGUA
.....((((.(((((((.((....))))))))).........(((((((..((((((..---..))))))))....(((......))).))))).....))))........ ( -31.90)
>consensus
CUCGGCUCGCGCCUUUUCCGCUCGCAAUGCAGCUAAACCAUUUCUGGGCCUGGCCUCGAUGAUCGUCGCCGAUCCAUUGGCCAAGUCAUCCGGGUUUUGCUGCAAUAUGUA
....((..(((.......)))..))..((((((.(((((.......(((.(((((.....(((((....)))))....))))).))).....))))).))))))....... (-28.68 = -29.68 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:44 2006