Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,081,688 – 5,081,786 |
Length | 98 |
Max. P | 0.516241 |
Location | 5,081,688 – 5,081,786 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 75.92 |
Mean single sequence MFE | -21.57 |
Consensus MFE | -11.07 |
Energy contribution | -11.77 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.38 |
Mean z-score | -1.67 |
Structure conservation index | 0.51 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5081688 98 + 27905053 CUGCCUGUAUUUCUGUCUUGAUCACUUUGUAGAUCUAGAUGCUUUCACGGUGUG-UACCUUGAAACUUACUCUAGUUACUGAACAUAAAUAUGAUGG----CA ..(((.((((((.(((((.((((........)))).)))...(((((.(((...-.))).)))))..................)).))))))...))----). ( -19.10) >DroSec_CAF1 8466 98 + 1 CUGCCUGUAUUUAUGUCUGGAUCACUUUGUAGAUCUAGAUGCUUUCACGGUGGG-UACCUUAAAACUUACCCUAGUUACUGUACCUAAAUAUGAUUG----CA ..............(((((((((........)))))))))((..(((...((((-(((.....((((......))))...)))))))....)))..)----). ( -26.40) >DroSim_CAF1 8567 98 + 1 CUGCCUGUAUUUAUGUCUGGAUCACUUUGUAGAUCUAGAUGCUUUCACGGUGCG-UACCUUAAAACUUACCCUAGUUACUGUACCUAAAUAUGAUUG----CA ..((.((((((((.(((((((((........)))))))))........((((((-((.((.............)).))).)))))))))))))...)----). ( -22.72) >DroEre_CAF1 13419 98 + 1 CUGCCUGUAUUUGUGUCUGGAUCACUUUGUAGAUCUAGAUGCUUUUACGGUGGG-UAUCUUAAAACUCUCUGUAGUCACUCUACAUAAAUCUUAUUU----CA (..((.(((...(((((((((((........)))))))))))...)))))..).-...............(((((.....)))))............----.. ( -26.60) >DroWil_CAF1 6326 91 + 1 AUGCCUUUAUUUAUGCUUAGAUCACUAUACAGACAUGGAUCGCUUUGCAGUGAGCUACCAU--AA-----UUUAUUAAUUUACCAUGAGUGU-----UAAUCU .......((((((((....((((.(...........)))))((((......))))......--..-----.............)))))))).-----...... ( -11.30) >DroYak_CAF1 11107 98 + 1 CUGUCUGUAUUUGUGUCUGGAUCACUUUGUAGAUCUGGAUGCUUUUACGGUGGG-UACCUUAAAACAUACUGUAGUAUCUCUACAUAAAUCUAAUUU----UA (((.(((((...(((((..((((........))))..)))))...)))))))).-...............(((((.....)))))............----.. ( -23.30) >consensus CUGCCUGUAUUUAUGUCUGGAUCACUUUGUAGAUCUAGAUGCUUUCACGGUGGG_UACCUUAAAACUUACUCUAGUUACUGUACAUAAAUAUGAUUG____CA ......(((((((((((((((((........)))))))).........((((...))))........................)))))))))........... (-11.07 = -11.77 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:41 2006