Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,078,936 – 5,079,054 |
Length | 118 |
Max. P | 0.666707 |
Location | 5,078,936 – 5,079,054 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 72.27 |
Mean single sequence MFE | -26.43 |
Consensus MFE | -15.46 |
Energy contribution | -16.14 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.18 |
Mean z-score | -1.62 |
Structure conservation index | 0.58 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666707 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5078936 118 - 27905053 CAACAAUAAUUUUAAGAAAUUUUGAUUCGCUUAGAGUUGUAGAGAACUGAAUCUUGAAUCU-CUGAUGGUUGUAGUGUUCGCAAGAGCAGUUUAGAAAAGACUGGUGGUCUCAGAUUUA .....(((((((((((..(.......)..))))))))))).((((......))))((((((-..(((.(..(...(((((....)))))((((.....)))))..).)))..)))))). ( -24.20) >DroSec_CAF1 5547 103 - 1 CAACUUUAAUUUUAAGGAAUUUUGAUUCACUUUGAGUUUUAGAGAACUGAAUUU----------------UGUAGUGCUCGCAAGAGCAGUAUAGAAAAGACUGGUGGUCUCAGAUUUA ...((..(((((.(((((((....)))).))).)))))..))....((((.(((----------------((((.(((((....))))).)))))))..(((.....)))))))..... ( -30.20) >DroSim_CAF1 5671 103 - 1 CAACUUUAAUUUUAAGGAAUUUUGAUUCACUUUGAGUUGUAGAGAACUGAAUCU----------------UGUAGUGCUCGCAAGCGCAGUAUAGAAAAGACUGGUGGUCUCAGAUUUA ...((.((((((.(((((((....)))).))).)))))).))....((((.(((----------------.(((.(((.(....).))).))))))...(((.....)))))))..... ( -24.00) >DroEre_CAF1 6948 118 - 1 -AGCUUAUAUUUUUAAUUAUUUUCUUUUGAUAAGAGUGGCGAACAACGGAAACAUUAAUAUACUUGAAGUUGUAUUGUUCGCGAGCGCAGCUUAAGAAAGACUGACGGUCUCAGCUUUU -((((..((((((((.(((........)))))))))))((((((((.(....).......(((........)))))))))))((.((((((((....))).))).)).))..))))... ( -27.30) >consensus CAACUUUAAUUUUAAGGAAUUUUGAUUCACUUAGAGUUGUAGAGAACUGAAUCU________________UGUAGUGCUCGCAAGAGCAGUAUAGAAAAGACUGGUGGUCUCAGAUUUA .......(((((((((.............))))))))).........((((((.................((((.(((((....))))).))))....((((.....))))..)))))) (-15.46 = -16.14 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:40 2006