Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,067,175 – 5,067,295 |
Length | 120 |
Max. P | 0.559954 |
Location | 5,067,175 – 5,067,295 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.56 |
Mean single sequence MFE | -45.08 |
Consensus MFE | -30.64 |
Energy contribution | -30.67 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.30 |
Mean z-score | -1.43 |
Structure conservation index | 0.68 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559954 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5067175 120 - 27905053 CUUGGCUGGCCACCGGUACCAGCGGCGGUAAGCACAUCUGCUGGGAUCUACGCUUCCGUCUGCCCAUUGCGGAAAUCAAGCAUCCGGCGGAUUCGUGGAUACGCAAGGUGGCCUGCCAUC ..((((.(((((((....(((((((..((....))..))))))).(((((((..((((((.((.....))(((.........)))))))))..)))))))......))))))).)))).. ( -57.40) >DroVir_CAF1 613 120 - 1 CUUGGCUGGCAACGGGCACCAGUGGUGGCAAGCAUAUCUGCUGGGACUUGCGUUUCCGACUGCCUAUAACCGAGAUUAAGCAUCCGGCGGACUCGUGGAUAAGAAAAGUGGCCUGCCAUC ..((((.(((.((.(.((((...)))).)...(((.(((((((((...(((...((((............)).))....))))))))))))...)))..........)).))).)))).. ( -36.80) >DroGri_CAF1 604 120 - 1 CGUGGCUGGCAACGGGCACCAGUGGGGGCAAGCACAUUUGCUGGGAUCUGCGAUUUCGGCUGCCCAUAACAGAGAUUAAGCAUCCGGCGGACUCGUGGAUAAGGAAAGUCGCCUGCCAUC .(((((.(((.(((((((...(((........)))....((((..(((...)))..)))))))))................(((((.((....))))))).......)).))).))))). ( -41.20) >DroWil_CAF1 602 120 - 1 CGUGGUUGGCCACUGGCACCAGCGGCGGCAAGCACAUAUGCUGGGAUUUGCGUUUCCGGCUGCCAAUUGCUGAGAUUAAGCAUCCGGCCGAUUCCUGGAUUCGCAAAGUGGCAUGCCAUC .(((((..((((((....((((((((.....)).....))))))...(((((..((((((.(((...((((.......))))...))).)....)))))..)))))))))))..))))). ( -48.10) >DroMoj_CAF1 613 120 - 1 CCUGGCUGGCAACGGGCACCAGUGGUGGCAAACAUAUCUGCUGGGACCUGCGUUUCCGACUACCCAUAACUGAGAUAAAGCAUCCAGCUGAUUCUUGGAUUAGAAAAGUUGCCUGCCAUC ..((((.(((((((((..((((..(((.....))...)..))))..)))....................(..(((...(((.....)))...)))..).........)))))).)))).. ( -41.00) >DroAna_CAF1 600 120 - 1 CGUGGCUAGCCACGGGAACAAGCGGAGGAAAGCACAUUUGCUGGGAUCUGCGCUUUCGGCUACCCAUUGCCGAGAUCAAACAUCCAGCAGACUCCUGGAUUCGCAAGGUGGCAUGUCACC .(((((..(((((........(((((....((((....))))....)))))(((((((((........)))))))......((((((.......))))))..))...)))))..))))). ( -46.00) >consensus CGUGGCUGGCAACGGGCACCAGCGGCGGCAAGCACAUCUGCUGGGAUCUGCGUUUCCGGCUGCCCAUAACCGAGAUUAAGCAUCCGGCGGACUCGUGGAUAAGCAAAGUGGCCUGCCAUC ..((((.((((((((((((((((((..(....)....)))))))......((....))..)))))................(((((.........))))).......)))))).)))).. (-30.64 = -30.67 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:32 2006