Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,062,570 – 5,062,679 |
Length | 109 |
Max. P | 0.750812 |
Location | 5,062,570 – 5,062,679 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 96.81 |
Mean single sequence MFE | -16.74 |
Consensus MFE | -16.70 |
Energy contribution | -16.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.14 |
Structure conservation index | 1.00 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750812 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5062570 109 - 27905053 GACGUUGAAGAAAUUCCUGGCCGAUUUCUUCUUCAUCAUCCUGUGUAAAUAAUUGUAAUUUAAAUAAUCUAAAUUUCGUAUUUAACGAAAGCACACA----CACCAUCAAAUC ((.(..(((((((((.......)))))))))..).))....(((((.....(((((.......))))).....((((((.....)))))))))))..----............ ( -16.70) >DroSec_CAF1 168818 113 - 1 GACGUUGAAGAAAUUCCUGGCCGAUUUCUUCUUCAUCAUCCUGUGUAAAUAAUUGUAAUUUAAAUAAUCUAAAUUUCGUAUGUAACGAAAGCACACACAUACACCAUCAAAUC ((.(..(((((((((.......)))))))))..).)).....(((((.......(.((((((.......)))))).)((.(((..(....).))).)).)))))......... ( -16.80) >DroSim_CAF1 174648 113 - 1 GACGUUGAAGAAAUUCCUGGCCGAUUUCUUCUUCAUCAUCCUGUGUAAAUAAUUGUAAUUUAAAUAAUCUAAAUUUCGUAUGUAACGAAAGCACACACAUACACCAUCAAAUC ((.(..(((((((((.......)))))))))..).)).....(((((.......(.((((((.......)))))).)((.(((..(....).))).)).)))))......... ( -16.80) >DroEre_CAF1 171618 113 - 1 GACGUUGAAGAAAUUCCUGGUCGAUUUCUUCUUCAUCAUCCUGUGUAAAUAAUUGUAAUUUAAAUAAUCUAAAUUUCGUAUUUAACGAAAGCACACACACACACCAUCAAAUC ((.(..(((((((((.......)))))))))..).))....(((((.....(((((.......))))).....((((((.....))))))))))).................. ( -16.70) >DroYak_CAF1 175764 111 - 1 GACGUUGAAGAAAUUCCUGGCCGAUUUCUUCUUCAUCAUCCUGUGUAAAUAAUUGUAAUUUAAAUAAUCUAAAUUUCGUAUUUAACGAAAGCACAC--ACACACCAUCAAAUC ((.(..(((((((((.......)))))))))..).))....(((((.....(((((.......))))).....((((((.....))))))))))).--............... ( -16.70) >consensus GACGUUGAAGAAAUUCCUGGCCGAUUUCUUCUUCAUCAUCCUGUGUAAAUAAUUGUAAUUUAAAUAAUCUAAAUUUCGUAUUUAACGAAAGCACACACACACACCAUCAAAUC ((.(..(((((((((.......)))))))))..).))....(((((.....(((((.......))))).....((((((.....))))))))))).................. (-16.70 = -16.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:31 2006