Locus 1754

Sequence ID 3R_DroMel_CAF1
Location 5,058,837 – 5,058,929
Length 92
Max. P 0.980697
window2881

overview

Window 1

Location 5,058,837 – 5,058,929
Length 92
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 94.18
Mean single sequence MFE -32.08
Consensus MFE -26.42
Energy contribution -28.26
Covariance contribution 1.84
Combinations/Pair 1.04
Mean z-score -2.21
Structure conservation index 0.82
SVM decision value 1.87
SVM RNA-class probability 0.980697
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5058837 92 - 27905053
UGGCGCUUAUUUCAGGGGGAGGAAGGUGGGCUUUAAUUCUCCCCCAGUUGACCUC--CGCAGAUUGUAUAAGUGUCUGCCAGAAAUGGUUGCAU
.(((((((((.((.((((((((((((....)))...))))))))).((.(....)--.)).))....))))))))).((((....))))..... ( -33.40)
>DroSec_CAF1 165116 92 - 1
UGGCGCUUAUUUCAGGGGGAGUAAGGUGGGCUUUAAUUCUCCCCCAGUUGACCUC--CGCAGAUUGUAUAAGUGUCUGCCAGAAAUGUUUGCAU
..(((..((((((.((((((((((((....)))))...)))))))..........--.((((((.........))))))..))))))..))).. ( -33.00)
>DroSim_CAF1 170948 92 - 1
UGGCGCUUAUUUCAGGGGGAGUAAGGUGGGCUUUAAUUCUCCCCCAGUUGACCUC--CGCAGAUUGUAUAAGUGUCUGCCAGAAAUGGUUGCAU
.(((((((((.((.((((((((((((....)))))...))))))).((.(....)--.)).))....))))))))).((((....))))..... ( -33.30)
>DroEre_CAF1 167784 94 - 1
UGUCGCUUAUUUCUGGGGUAUGAAGGUGGGCUUUAAUUCCCCCCCAGUUGACCUCCCCGCAGAUUGUAUAAGUGUCUGCCAGAAAUGGUUGCAU
(((.(((.((((((((((.....((.((((............)))).)).....))))((((((.........)))))).))))))))).))). ( -28.90)
>DroYak_CAF1 171888 92 - 1
UGGCGCUUACUUCUGGGGGAUGCAGGUGGGCUUUCAUUCUCCCCCAGUUGACCUC--CGCAGAUUGUAUAAGUGUCUGCCAGAAAUGGUUGCAU
.((((((((..((((((((...(((.((((............)))).)))..)))--).)))).....)))))))).((((....))))..... ( -31.80)
>consensus
UGGCGCUUAUUUCAGGGGGAGGAAGGUGGGCUUUAAUUCUCCCCCAGUUGACCUC__CGCAGAUUGUAUAAGUGUCUGCCAGAAAUGGUUGCAU
..(((.(((((((.((((((((((((....)))))...))))))).............((((((.........))))))..))))))).))).. (-26.42 = -28.26 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:28 2006