Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,055,751 – 5,055,851 |
Length | 100 |
Max. P | 0.786223 |
Location | 5,055,751 – 5,055,851 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 83.79 |
Mean single sequence MFE | -19.11 |
Consensus MFE | -10.46 |
Energy contribution | -13.66 |
Covariance contribution | 3.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.64 |
Structure conservation index | 0.55 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5055751 100 + 27905053 ---AGAAACCCCAAGAACAACAACAACAAGUUUGCGAAAACUCUCUUUUGCACAACUUUACUUUACCUCCAGCCAGGAGGUCUUUAUUUUGUUACUAUUAUUC ---..........(((((((.......((((((((((((......))))))).)))))......((((((.....)))))).......))))).))....... ( -20.10) >DroSec_CAF1 162039 100 + 1 ---AGAAACCCCGAGAACAACAACAACAAGUUUGCGAAAACUCUCUUUUGCACAACUUUAGUUUACCUCCUGCCAGGAGGUCCUUACUUUGUUACUAUUAUUC ---..........(((((((.......((((((((((((......))))))).))))).(((..((((((.....))))))....)))))))).))....... ( -21.00) >DroSim_CAF1 167809 100 + 1 ---GGAAACCCCGAGAACAACAACAACAAGUUUGCGAAAACUCUCUUUUGCACAACUUUACUUUACCUCCUGCCAGGAGGUCCUUAUUUUGUUACUAUUAUUC ---((.....)).(((((((.......((((((((((((......))))))).)))))......((((((.....)))))).......))))).))....... ( -21.30) >DroEre_CAF1 164651 80 + 1 ---AGAAAACCCAAGAAAAACAAG--------------AACUCUCUUUUGCAGAACUUUAC------UCCUGCCAGGAGGUCCUUAUUUUGUUACUCUUAUUC ---.........((((..((((((--------------(((.(((((..((((........------..)))).))))))).....)))))))..)))).... ( -14.80) >DroYak_CAF1 168648 103 + 1 CCAAGAAAACCAUAGAACAACAACAACAAGUUUGCUAUAACUCUCUUUUGCACAACUUUACUUUACCUCCUGCUAGGAGGUCCUUAUUUUGUUGCUAUUACUC ...........((((..((((((....((((((((..............))).)))))......((((((.....)))))).......))))))))))..... ( -18.34) >consensus ___AGAAACCCCAAGAACAACAACAACAAGUUUGCGAAAACUCUCUUUUGCACAACUUUACUUUACCUCCUGCCAGGAGGUCCUUAUUUUGUUACUAUUAUUC ..................(((((....((((((((((((......))))))).)))))......((((((.....)))))).......))))).......... (-10.46 = -13.66 + 3.20)
Location | 5,055,751 – 5,055,851 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 83.79 |
Mean single sequence MFE | -25.96 |
Consensus MFE | -16.00 |
Energy contribution | -18.12 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.08 |
Mean z-score | -2.29 |
Structure conservation index | 0.62 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779617 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5055751 100 - 27905053 GAAUAAUAGUAACAAAAUAAAGACCUCCUGGCUGGAGGUAAAGUAAAGUUGUGCAAAAGAGAGUUUUCGCAAACUUGUUGUUGUUGUUCUUGGGGUUUCU--- (((((((((((((.........((((((.....))))))......(((((.(((.((((....)))).)))))))))))))))))))))...........--- ( -26.20) >DroSec_CAF1 162039 100 - 1 GAAUAAUAGUAACAAAGUAAGGACCUCCUGGCAGGAGGUAAACUAAAGUUGUGCAAAAGAGAGUUUUCGCAAACUUGUUGUUGUUGUUCUCGGGGUUUCU--- (((((((((((((((.((.((.((((((.....))))))...))....(((((.((((.....))))))))))))))))))))))))))...........--- ( -27.10) >DroSim_CAF1 167809 100 - 1 GAAUAAUAGUAACAAAAUAAGGACCUCCUGGCAGGAGGUAAAGUAAAGUUGUGCAAAAGAGAGUUUUCGCAAACUUGUUGUUGUUGUUCUCGGGGUUUCC--- (((((((((((((.........((((((.....))))))......(((((.(((.((((....)))).)))))))))))))))))))))...........--- ( -25.90) >DroEre_CAF1 164651 80 - 1 GAAUAAGAGUAACAAAAUAAGGACCUCCUGGCAGGA------GUAAAGUUCUGCAAAAGAGAGUU--------------CUUGUUUUUCUUGGGUUUUCU--- ((((..(((....((((((((((((((...((((((------......))))))....))).)))--------------)))))))).)))..))))...--- ( -23.30) >DroYak_CAF1 168648 103 - 1 GAGUAAUAGCAACAAAAUAAGGACCUCCUAGCAGGAGGUAAAGUAAAGUUGUGCAAAAGAGAGUUAUAGCAAACUUGUUGUUGUUGUUCUAUGGUUUUCUUGG (((((((((((((((.......((((((.....))))))........(((((((........).))))))....))))))))))))))).............. ( -27.30) >consensus GAAUAAUAGUAACAAAAUAAGGACCUCCUGGCAGGAGGUAAAGUAAAGUUGUGCAAAAGAGAGUUUUCGCAAACUUGUUGUUGUUGUUCUCGGGGUUUCU___ (((((((((((((((.......((((((.....))))))...(((......)))....................))))))))))))))).............. (-16.00 = -18.12 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:26 2006