Locus 1750

Sequence ID 3R_DroMel_CAF1
Location 5,052,719 – 5,052,816
Length 97
Max. P 0.970358
window2875

overview

Window 5

Location 5,052,719 – 5,052,816
Length 97
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 86.28
Mean single sequence MFE -24.59
Consensus MFE -19.39
Energy contribution -19.99
Covariance contribution 0.60
Combinations/Pair 1.16
Mean z-score -2.38
Structure conservation index 0.79
SVM decision value 1.66
SVM RNA-class probability 0.970358
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5052719 97 - 27905053
AGAGAUAUGUAGGGGAUCCACCAACCCCUGACCCUGCC------------CGUGUUCCCCUUCAUUAGCGUUUCUCUUGCUCUUUUUAAACAGCAUAAAUUGUUGCUGA
(((((.((((((((((..(((.................------------.))).))))))......)))).))))).............(((((........))))). ( -23.77)
>DroSec_CAF1 158952 95 - 1
ACAGAUAUGAAGGGGAUCCCCCAACCCCUGACCCUGCC------------CC--UUCCCCAUCAUUAGCGAUUCUCUCGCUGUUUUUAAACAGCAUAAAUUGUUGCUGA
...(((..(((((((......((.....))......))------------))--)))...))).((((((((......((((((....)))))).......)))))))) ( -26.92)
>DroSim_CAF1 164667 95 - 1
AGAGAUAUGCAGGGGAUCCCCCAACCCCUGACCCUGCC------------CC--UUCCCCAUCAUUAGCGUUGCUCUCGCUGUUUUUAAACAGCAUAAAUUGUUGCUGA
((((((..((((((.................)))))).------------..--............((((.......))))))))))...(((((........))))). ( -22.23)
>DroEre_CAF1 161292 95 - 1
CGAGACAUGGAGGGGAUCCCACAACCACUGCCCCAGCC------------CC--UUCCCCUUCAUUAGCGUUUCUCUCGCUCUUUUUAAACAGCAUAAAUUGUUGCUGA
.(((((((((((((((......................------------..--.))))))))))....)))))................(((((........))))). ( -24.71)
>DroYak_CAF1 165386 107 - 1
GGAGAUAUGGAGGGUAUCCCCCAACCCCUGCCCCUGCCCCUGCCCUAUCCCC--UUCUCCUUCAUUAGCGUUUCUCUCGCUCUUUUUAAACAGCAUAAAUUGUUGCUGA
(((((...(((((((........))))..((....))..........)))..--.)))))......((((.......)))).........(((((........))))). ( -25.30)
>consensus
AGAGAUAUGGAGGGGAUCCCCCAACCCCUGACCCUGCC____________CC__UUCCCCUUCAUUAGCGUUUCUCUCGCUCUUUUUAAACAGCAUAAAUUGUUGCUGA
......((((((((((.......................................)))))))))).((((.......)))).........(((((........))))). (-19.39 = -19.99 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:22 2006