Locus 1749

Sequence ID 3R_DroMel_CAF1
Location 5,051,048 – 5,051,154
Length 106
Max. P 0.854899
window2874

overview

Window 4

Location 5,051,048 – 5,051,154
Length 106
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 78.52
Mean single sequence MFE -21.50
Consensus MFE -16.26
Energy contribution -16.93
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.76
SVM decision value 0.80
SVM RNA-class probability 0.854899
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5051048 106 - 27905053
UCAUUGAGUCAGUCACAGAUAAACUCUUAACUGAAUAGUAGAGAAAAAUGGCAAGGAAUAAGCUUAAUUGACCAAUGCAUUGGUCAAUGGGGCAUCGAUGUGCUGU
.(((((((((((((...)))....((((.(((....))).))))....)))).........(((..(((((((((....)))))))))..))).))))))...... ( -27.40)
>DroSec_CAF1 157304 86 - 1
UCAUU---------------AAACUCUUAAUCGAAUAGUAUGAAAUAAUUGCAAGGAACAAGCUUAAUGGACC-----AUUGGUCAAUUGGGCAUCAAAGUGCUGU
(((((---------------((....))))).))(((((((.......(((.......)))(((((((.((((-----...)))).)))))))......))))))) ( -16.00)
>DroSim_CAF1 163078 86 - 1
UCAUU---------------AAACUCUUAAUCGAAUAGUAUGGAAUAAUUGCAAGGAACAAGCUUAAUUGACC-----AUUGGUCAAUUGGGCAUCGAUGUGCUGU
.....---------------..((.....(((((...(((.........))).........((((((((((((-----...)))))))))))).))))).....)) ( -21.10)
>consensus
UCAUU_______________AAACUCUUAAUCGAAUAGUAUGGAAUAAUUGCAAGGAACAAGCUUAAUUGACC_____AUUGGUCAAUUGGGCAUCGAUGUGCUGU
..................................................(((........((((((((((((........)))))))))))).......)))... (-16.26 = -16.93 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:21 2006