Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,048,344 – 5,048,445 |
Length | 101 |
Max. P | 0.939441 |
Location | 5,048,344 – 5,048,445 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 97.82 |
Mean single sequence MFE | -22.48 |
Consensus MFE | -22.08 |
Energy contribution | -22.12 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.44 |
Structure conservation index | 0.98 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5048344 101 + 27905053 GCAAAAGAAAUAAACAGUGCAGUGCAACGCUAAAUGUUUUUACUUCGCCGUGUGUAUUUGGCAAAAUGCAAUGCAGUAAAUUCUAGAAGAUUAAUUGGAUU ...............(.((((.((((..((((((((....(((......)))..))))))))....)))).)))).)....(((((........))))).. ( -17.20) >DroSec_CAF1 154605 101 + 1 GCAGAAGAAAUAAAGAGUGCAGUGCAAUGCUAAAUGCUUUUACUUCGCCGUGUGUAUUUGGCAAAAUGCAAUGCAGUAAAUUCUAGAAGAUUAAUUGGAUU .....((((......(.((((.((((.((((((((((...(((......))).))))))))))...)))).)))).)...))))................. ( -23.70) >DroSim_CAF1 160401 101 + 1 GCAGAAGAAAUAAAGAGUGCAGUGCAAUGCUAAAUGCUUUUACUUCGCCGUGUGUAUUUGGCAAAAUGCAAUGCAGUAAAUUCUAGAAGAUUAAUUGGAUU .....((((......(.((((.((((.((((((((((...(((......))).))))))))))...)))).)))).)...))))................. ( -23.70) >DroEre_CAF1 156980 101 + 1 GCAGAAGAAAUAAAGAGUGCAGUGCAAUGCUAAAUGCUUUUACUUCGGCGUGUGUAUUUGGCAAAAUGCAAUGCAGUAAAUUCUAGAAGAUUAAUUGGAUU .....((((......(.((((.((((.((((((((((.....(....).....))))))))))...)))).)))).)...))))................. ( -23.90) >DroYak_CAF1 161124 101 + 1 GCAGAAGAAAUAAAGAGUGCAGUGCAAUGCUAAAUGCUUUUACUUCGGCGUGUGUAUUUGGCAAAAUGCAAUGCAGUAAAUUCUAGAAGAUUAAUUGGAUU .....((((......(.((((.((((.((((((((((.....(....).....))))))))))...)))).)))).)...))))................. ( -23.90) >consensus GCAGAAGAAAUAAAGAGUGCAGUGCAAUGCUAAAUGCUUUUACUUCGCCGUGUGUAUUUGGCAAAAUGCAAUGCAGUAAAUUCUAGAAGAUUAAUUGGAUU .....((((......(.((((.((((.((((((((((...(((......))).))))))))))...)))).)))).)...))))................. (-22.08 = -22.12 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:20 2006