Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,045,291 – 5,045,388 |
Length | 97 |
Max. P | 0.584034 |
Location | 5,045,291 – 5,045,388 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 95.04 |
Mean single sequence MFE | -20.16 |
Consensus MFE | -16.28 |
Energy contribution | -16.12 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.13 |
Mean z-score | -1.52 |
Structure conservation index | 0.81 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5045291 97 - 27905053 AUUUUCGUUGGCUUUAUUUACAAAUUUUUGGCUUGGAUACGCCAAAUAUUUGUUAAGAGAUU-UCGGUGUUUGGUAAUCUCUAAAACCAUCGCCGUUC .........(((.......((((((.((((((........)))))).))))))..(((((((-.(.(....).).))))))).........))).... ( -24.10) >DroSec_CAF1 151533 96 - 1 AUUUUCGUUGGCUUUAUUUACA-AUUUUUGGCUUGGAUACGCUAAAUAUUUGUUAAGAGAUU-UCUGUGUUUGGUAAUCUCUAAAACCAUCGCCGUUC .........(((.......(((-(..((((((........))))))...))))..(((((((-.((......)).))))))).........))).... ( -19.90) >DroSim_CAF1 157358 96 - 1 AUUUUCGUUGGCUUUAUUUACA-AUUUUUGGCUUGGAUACGCUAAAUAUUUGUUAAGAGAUU-UCGGUGUUUGGUAAUCUCUAAAACCAUCGCCGUUC .........(((.......(((-(..((((((........))))))...))))..(((((((-.(.(....).).))))))).........))).... ( -19.00) >DroEre_CAF1 153818 96 - 1 AUUUUCGUUGGUUUUAUUUACA-AUUUUUGGUUUAGAUACGCUAAAUAUUUGUUAAGAGAUU-UCGGUGUUUGGUAAUCUCUAAAACCAUCGCCGUUU .....((.(((((((....(((-(..((((((........))))))...))))..(((((((-.(.(....).).)))))))))))))).))...... ( -19.50) >DroYak_CAF1 157900 97 - 1 AUUUUCGUUGGCUUUAUUUACC-AUUUUUGGUUUGGAUACGCUAAAUAUUUGUUAAGAGAUUUUCGGUGUUUGGUAAUCUCCACAACCAUCGCCGUUU .......(((((..((((((((-(....))))..))))).)))))...................(((((..((((..........)))).)))))... ( -18.30) >consensus AUUUUCGUUGGCUUUAUUUACA_AUUUUUGGCUUGGAUACGCUAAAUAUUUGUUAAGAGAUU_UCGGUGUUUGGUAAUCUCUAAAACCAUCGCCGUUC .........(((.......(((.((.((((((........)))))).)).)))..(((((((.((.......)).))))))).........))).... (-16.28 = -16.12 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:16 2006