Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,043,111 – 5,043,224 |
Length | 113 |
Max. P | 0.524849 |
Location | 5,043,111 – 5,043,224 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.15 |
Mean single sequence MFE | -19.98 |
Consensus MFE | -13.44 |
Energy contribution | -13.50 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -1.51 |
Structure conservation index | 0.67 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5043111 113 + 27905053 GCCAAUUAUUAGCAUAUGCUCGCAAGUAAUAUAUUACUAAAUAAUACGAAACUAAGGCAAUUAUUUCCUUAACUGACAUCAAUAUGUAAUUGCUAAGAGCUCUUAAUUAAGUA------- ...(((((..(((((((...(....)..)))).......................(((((((((.....................)))))))))....)))..))))).....------- ( -15.70) >DroSim_CAF1 155170 120 + 1 GCCAAUUAUUAGCAUAUGCUCGCAAGUAAUAUAUUACUAAAUAAUACGAAACUAAGGCAAUUAUUUCCUUAACUGACAUCAAUGUGUAAUUGCUAAAAGCUCUUAAUUAAGUUUCAGCUG ((..(((((((((....)))....(((((....))))).))))))..((((((..(((((((((.....................)))))))))..((....)).....)))))).)).. ( -16.50) >DroEre_CAF1 151533 107 + 1 GCCAAUUAUUAGCAUAUGCUCGCAAGUAAUAUAUUACUAAAUAUUAGGAAACUAAAGCAAUUA-------------CAUCAAUGUGUAAUUGCUAAAAGUUCUUAAUUAAGUUUCAGCUG .........((((((((...(....)..))))...(((....((((((((.....((((((((-------------(((....))))))))))).....))))))))..)))....)))) ( -24.70) >DroYak_CAF1 155531 107 + 1 GCCAAUUAUUAGCAUAUGCUCGCCAGUAAGAUAUUACUAAAUAAUAGGAAAUUAAAGCAAUUA-------------CAUCAAUGUGUAAUUGCUAAAAGCUCUUAAUUAAGUUUCAGCUG .((.(((((((((....)))....(((((....))))).)))))).)).......((((((((-------------(((....)))))))))))...(((((((....)))....)))). ( -23.00) >consensus GCCAAUUAUUAGCAUAUGCUCGCAAGUAAUAUAUUACUAAAUAAUACGAAACUAAAGCAAUUA_____________CAUCAAUGUGUAAUUGCUAAAAGCUCUUAAUUAAGUUUCAGCUG ...(((((..(((...........(((((....))))).................(((((((((.....................)))))))))....)))..)))))............ (-13.44 = -13.50 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:15 2006