Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,025,780 – 5,025,882 |
Length | 102 |
Max. P | 0.956602 |
Location | 5,025,780 – 5,025,882 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 76.93 |
Mean single sequence MFE | -25.13 |
Consensus MFE | -11.15 |
Energy contribution | -11.77 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.30 |
Mean z-score | -2.66 |
Structure conservation index | 0.44 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5025780 102 + 27905053 -----CGAGCAAUUACGGUGAAUUGCACAAUUGUGAAGCCAAUUGGAAAAUUUACCAA-AAC-ACAGUUAAUUUGUGGCAAAAGUCAGAAACCGACAGCA--CACAAUCGA -----(((((......((((((((...((((((......))))))...))))))))..-..(-((((.....)))))))....(((.......)))....--.....))). ( -25.60) >DroSim_CAF1 136798 102 + 1 -----CGAGCAAUUACGGUGAAUUGCACAAUUGUGUAGCCAAUUGGAAAAUUUACCAA-AAC-ACAGUUAAUUUGUGGCAAAAGUCAGAAACCGACAGCA--CACAAUCGA -----(((((......((((((((...((((((......))))))...))))))))..-..(-((((.....)))))))....(((.......)))....--.....))). ( -25.60) >DroEre_CAF1 134013 100 + 1 -----CGAGCAAUUACGGUGAAUUGCACAAUUGUGUAGCCAAUUGGAAAAUUUACCAA-AAC-ACAGUUAAUUUGUGGCAA--GUCAGAAACCGACAUAC--CACAAUCGA -----(((........((((((((...((((((......))))))...))))))))..-...-.........((((((...--(((.......)))...)--)))))))). ( -25.90) >DroYak_CAF1 137915 100 + 1 -----CGAGCAAUUUCGGUGAAUUGCACAAUUGUGUAGCCAAUUGGAAAAUUUACCAA-AAC-GCAGUUAAUUUGCGGCAA--GUCAGAAACCGACAGCC--CACAAUCGA -----(((((......((((((((...((((((......))))))...))))))))..-..(-((((.....)))))))..--(((.......)))....--.....))). ( -27.10) >DroMoj_CAF1 161598 110 + 1 CUGAAAUGGCAUUUGCACCUAAUUGCAUAAUUGCCAAGUCAACUGGAAAAUUUGCUAA-AAUGCCAGUUAAUUUGUGGUGUAUGCGAGACAGCUACAGAUAAAUUAAUAGA ..((..(((((..((((......))))....)))))..))((((((...((((....)-))).)))))).(((((((((((.......))).))))))))........... ( -29.80) >DroAna_CAF1 131418 93 + 1 -----GUUGCACAUUCUCUUAAUUGCACAAUUGUGCAAUCGAAUGGAAAAUUUACCAAAAAU-ACAGUUAAUUUGCGGGAA--GUCAAA-ACC---------AACAAUCGA -----.(((.((.((((((..(((((((....)))))))..).(((........))).....-.............)))))--))))).-...---------......... ( -16.80) >consensus _____CGAGCAAUUACGGUGAAUUGCACAAUUGUGUAGCCAAUUGGAAAAUUUACCAA_AAC_ACAGUUAAUUUGUGGCAA__GUCAGAAACCGACAGCA__CACAAUCGA ........((......((((((((...((((((......))))))...)))))))).......((((.....)))).))................................ (-11.15 = -11.77 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:11 2006