Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 836,253 – 836,366 |
Length | 113 |
Max. P | 0.843867 |
Location | 836,253 – 836,366 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 96.46 |
Mean single sequence MFE | -37.26 |
Consensus MFE | -33.88 |
Energy contribution | -34.88 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.99 |
Structure conservation index | 0.91 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 836253 113 + 27905053 AUACAUAUAUAUAAAUACAUUCGCUUGCCGCAGUUUGCCUCGAGAUUAGCGGAAGCGAGAACAGUCAGUGGGCAAUGUGGAGCAAGGCUUCUCUGCGGCGAUGACGAUGUGAC ...............(((((.((((((((((((.((((((...((((.((....))......))))...))))))...(((((...))))).))))))))).).))))))).. ( -37.70) >DroSec_CAF1 11695 113 + 1 AUACAUAUAUAUAAAUACAUUCGCUUGCCGCAGUUUGCCUCGAGAUUAGCGGAAGCGAGAACAGUCAGUGGGCAAUGUGGAGCAAGGCUUCUCUGCGGCGAUGACGAUGUGAC ...............(((((.((((((((((((.((((((...((((.((....))......))))...))))))...(((((...))))).))))))))).).))))))).. ( -37.70) >DroSim_CAF1 10609 113 + 1 AUACAUAUAUAUAAAUACAUUCGCUUGCCGCAGUUUGCCUCGAGAUUAGCGGAAGCGAGAACAGUCAGUGGGCAAUGUGGAGCAAGGCUUCUCUGCGGCGAUGACGAUGUGAC ...............(((((.((((((((((((.((((((...((((.((....))......))))...))))))...(((((...))))).))))))))).).))))))).. ( -37.70) >DroEre_CAF1 13333 109 + 1 GCAUAUAUAUAUAAAUACAUUCGCUUGCCGCAGUUUGGCUCGAGAUUAGCGGAAGCGAGAA----CAGUGGGCAAUGUGGAGCAAGGCUUCUCUGCGGCGAUGACGAUGUGAC ...............(((((.((((((((((((....(((((......((....)).....----...))))).....(((((...))))).))))))))).).))))))).. ( -35.94) >consensus AUACAUAUAUAUAAAUACAUUCGCUUGCCGCAGUUUGCCUCGAGAUUAGCGGAAGCGAGAACAGUCAGUGGGCAAUGUGGAGCAAGGCUUCUCUGCGGCGAUGACGAUGUGAC ...............(((((.((((((((((((.((((((...((((.((....))......))))...))))))...(((((...))))).))))))))).).))))))).. (-33.88 = -34.88 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:49 2006