Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,993,656 – 4,993,749 |
Length | 93 |
Max. P | 0.563238 |
Location | 4,993,656 – 4,993,749 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 82.70 |
Mean single sequence MFE | -20.00 |
Consensus MFE | -13.20 |
Energy contribution | -13.20 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.66 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4993656 93 + 27905053 ---------GCAAAACUGCGCAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCGCU--AGACUUGAGU ---------((((...(((((...(((((....)))))...)))))........))))..((((..((((((...............)))))--).....)))) ( -20.06) >DroVir_CAF1 130638 101 + 1 CAAAAACAAUCUAAACUGUACAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCGCC--AAG-UGUGUA ................((..(...(((((....)))))...)..)).........((((((((...((((((...............)))))--)))-)))))) ( -19.66) >DroPse_CAF1 143338 95 + 1 ---------GCAAAACUGCGCAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCGCUCAGGACUUGCAC ---------((((..(((.((..((((......(((((...((((...((((...........)))).))))...)))))....)))).)).)))...)))).. ( -23.80) >DroGri_CAF1 123196 102 + 1 CAAGAGCAAUCUAAACUGUGCAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCGUU--AACAUCCAAA ..(((....)))....(((..((((((......(((((...((((...((((...........)))).))))...)))))......))))))--.)))...... ( -20.20) >DroMoj_CAF1 118428 98 + 1 CAACGACCAUCUAAACUGUACAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCCCC--GAG-CCG--- .......................((((......(((((...((((...((((...........)))).))))...)))))....))))....--...-...--- ( -13.20) >DroPer_CAF1 149736 95 + 1 ---------GCAAAACUGCGCAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCGCUCGGGACUUGCAC ---------((((..(((.((..((((......(((((...((((...((((...........)))).))))...)))))....)))).)).)))...)))).. ( -23.10) >consensus _________GCAAAACUGCGCAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCGCU__AAACUUGAAA .......................((((......(((((...((((...((((...........)))).))))...)))))....))))................ (-13.20 = -13.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:03 2006