Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,993,407 – 4,993,504 |
Length | 97 |
Max. P | 0.508589 |
Location | 4,993,407 – 4,993,504 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 82.53 |
Mean single sequence MFE | -18.57 |
Consensus MFE | -12.38 |
Energy contribution | -12.58 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.67 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4993407 97 + 27905053 ACUCCCUUGCUGUUAAUUUAAGUUCAAAUUCAGU------UUGCAUUAGGAAUUAUGAUUUUGAAUGCAUUUCCACCUUUU--UGGUUGCUCUUUUGAUCGGCUU ........((((((((.....(((((((.(((..------((.(....).))...))).)))))))(((...(((......--))).)))....)))).)))).. ( -18.60) >DroSec_CAF1 100012 79 + 1 ACUCACUGGCUG------------------CACU------UUGCAUUAGGAAUUAUGAUUUUAAAUGCACUACCACCUUUU--UGGUUGCUCUUUUGAUCGGCUU ..((.((((.((------------------(...------..)))))))))....(((((..((..(((..((((......--)))))))..))..))))).... ( -14.90) >DroSim_CAF1 103926 96 + 1 ACUCACUGGCUGUUAAUUUAAGCUCA-AUUCAGU------UUGCAUUAGGAAUUAUGAUUUUGAAUGCAUUUCCACCUUUU--UGGUUGCUCUUUUGAUCGGCUU .......(((((((((....(((...-.......------.((((((..((((....))))..)))))).....(((....--.))).)))...)))).))))). ( -18.30) >DroEre_CAF1 101065 104 + 1 CCCCUCUUGCUGUUAAUUUAAUCUCA-AUUCACAUGGCAAUUGCAUUAGGAAUUAUGCUUUUGAAUGCAUUUCCACCUUUAUGUGGUUGCUCUUUUGAUCGGCUU ........((((..............-..(((...((((((..(((.(((....((((........)))).....)))..)))..))))))....))).)))).. ( -22.93) >DroYak_CAF1 102360 96 + 1 ACUCUCUAGCUGUUAAUUUAAGCUCA-AUUCACA------UUGCAUUAGGAAUUAUAAUUUUGAAUGCAUUUUCACCUUUU--UGGUUGCUCUUUUGAUCGGCUU .......(((((((((....(((...-.......------.((((((..((((....))))..)))))).....(((....--.))).)))...)))).))))). ( -18.10) >consensus ACUCACUGGCUGUUAAUUUAAGCUCA_AUUCACU______UUGCAUUAGGAAUUAUGAUUUUGAAUGCAUUUCCACCUUUU__UGGUUGCUCUUUUGAUCGGCUU ........((((.............................((((((..((((....))))..)))))).....(((.......)))............)))).. (-12.38 = -12.58 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:02 2006