Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,978,114 – 4,978,209 |
Length | 95 |
Max. P | 0.722194 |
Location | 4,978,114 – 4,978,209 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.94 |
Mean single sequence MFE | -18.11 |
Consensus MFE | -2.98 |
Energy contribution | -3.26 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.14 |
Mean z-score | -1.77 |
Structure conservation index | 0.16 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4978114 95 + 27905053 ACUUAUU--------------UCUUGAAGUG---CAGU--------UCGCCAAUUUGCAAAAGCUCAUUGUGUUUCAAAAAUGAUACGUUUUCUCUGCUCAACUUUCGAGAGAUAAUAUC ..(((((--------------((((((((((---(((.--------....((((..((....))..)))).((.(((....))).)).......))))...)).)))))))))))).... ( -21.10) >DroSec_CAF1 84872 103 + 1 ACUUAUU--------------UCUUGAAGUG---CAGUACAUAUACUCGCCAAUUUGCACAAGCUCAUUCUGUUUCAAAACUGAUAAGUUUUCUCUGCUCAACUUUCGAGAAAUAAUAUC ..(((((--------------((((((((((---(((.................))))))...........((...((((((....))))))....))......)))))))))))).... ( -21.13) >DroSim_CAF1 86705 80 + 1 ACUUAUU--------------UCUUCAAGUG---C-----------------------AAAAGCUCAUUCUGUUUCAAAACUGAUAAGUUUUCUCUGCUCAACUUUCGAGAGAUAAUAUC ..(((((--------------((((.(((((---(-----------------------(((((((...((.(((....))).))..))))))...)))...))))..))))))))).... ( -14.40) >DroEre_CAF1 85612 116 + 1 UUUCAUUGUAUAAUUUCAUUUUUUUUAAGUGUCGCAGU----GUAUUCACCAAUUUGCUAAAGCUCAUUGUGUUUCAAAAAUGAUAACUUUCCUCUGCUCAACUUUCAAGAGAUAAUAUC .................(((((((..((((...((((.----(.......((((..((....))..)))).((((((....))).)))....).))))...))))..)))))))...... ( -16.10) >DroYak_CAF1 86691 113 + 1 UUUCAUUGUUUAAUUC--UUUUUUUUAGAUGUUACAGU----GUAUCCUCGAAUUUGCUAAAACUCAUUGAGUUUCAA-AAUGAUAACAUUUCUCUGCUCAACUUUCCAGAGAUGAUAUC ...((((((.....((--(.......)))....)))))----)(((((((((.(((....))).)).((((((....(-((((....)))))....)))))).......)))..)))).. ( -17.80) >consensus ACUUAUU______________UCUUGAAGUG___CAGU_____UA_UCGCCAAUUUGCAAAAGCUCAUUGUGUUUCAAAAAUGAUAAGUUUUCUCUGCUCAACUUUCGAGAGAUAAUAUC ............................................................((((.......)))).......((((...((((((............))))))...)))) ( -2.98 = -3.26 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:55 2006