Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 836,067 – 836,158 |
Length | 91 |
Max. P | 0.983310 |
Location | 836,067 – 836,158 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 78.46 |
Mean single sequence MFE | -17.04 |
Consensus MFE | -14.05 |
Energy contribution | -13.62 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.22 |
Mean z-score | -2.02 |
Structure conservation index | 0.82 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983310 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 836067 91 - 27905053 AAAUGCUAAUUCACUUCGCUGAGAUUUCCAAUGAUAAAAUCCAGAUUUCCAAAGCUGUAAUUCUUUAGUACGCAUUUUGGAAAUUCAAGCA ...((((...........(((.(((((.........))))))))((((((((((.(((.............)))))))))))))...)))) ( -16.22) >DroSec_CAF1 11524 78 - 1 AAAUGCUAUCUCACUUCGCUGAGAUAUCCAAUGAUCAU-------------UGGCUGUAUUCCUUUAGUACACCCUUUGGAUAUCCAAGCA .................(((..(((((((((.......-------------.((.((((((.....)))))).)).)))))))))..))). ( -20.70) >DroSim_CAF1 10438 78 - 1 AAAUGCUAUCUCACUUCGCUGAGAUAUCCAAUGAUCAA-------------UGGUUGUAAUCCUUUAGUACGCCCUUUGGAAAUCCAAGCA ...((((((((((......)))))).(((((.......-------------.((.((((.........)))).)).)))))......)))) ( -14.20) >consensus AAAUGCUAUCUCACUUCGCUGAGAUAUCCAAUGAUCAA_____________UGGCUGUAAUCCUUUAGUACGCCCUUUGGAAAUCCAAGCA .................(((..(((((((((.....................((.((((.........)))).)).)))))))))..))). (-14.05 = -13.62 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:48 2006