Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,971,776 – 4,971,883 |
Length | 107 |
Max. P | 0.500000 |
Location | 4,971,776 – 4,971,883 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 70.24 |
Mean single sequence MFE | -18.02 |
Consensus MFE | -9.19 |
Energy contribution | -8.88 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.25 |
Mean z-score | -1.44 |
Structure conservation index | 0.51 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4971776 107 + 27905053 GAUCGC-CCCCCGCACAGCAGUUUGCCAUUUUCCCGGGAAACGCAUUUCGCCGCAAAUCGUUUUCCAACCCACCUCCC--ACC-------AACCAUCGCCACGAAAUGCUCUAA-AAU ....((-.....))......((((.((........)).))))((((((((..((........................--...-------.......))..)))))))).....-... ( -17.28) >DroPse_CAF1 117394 82 + 1 GCCCC--CCUUGGGGAUGGGGUUUGCCAUUUCCGAGGGAAAUGCAUUUUCCAGCAAAUUGUUUCC---------------------------------CCUCGAAUCGCACAAA-AAU ((..(--((((((..((((......))))..)))))))...(((........)))..........---------------------------------.........)).....-... ( -25.70) >DroSec_CAF1 78624 111 + 1 GAUCU--CCCACGCACAGCAGUUUGCCAUUUUCCCGGGAAACGCAUUUCGCCGCAAAUCGUUUUCCAACCCACCUCCC--CCCA---CCAAACCCUUGCCACGAAAUGCUCUAAAAAU .....--.............((((.((........)).))))((((((((..((((...((((...............--....---..))))..))))..))))))))......... ( -19.70) >DroSim_CAF1 80443 92 + 1 GAUCC--CACCCGCACAGCAGUUUGCCAUUUUCCCGGGAAACGCAUUUCGCCGCAAAUCGUUUUCCAACCCAACUCCC--C----------------------AACUGCUCUAAAAAU .....--.........(((((((............((((((((.((((......))))))))))))............--.----------------------)))))))........ ( -16.71) >DroEre_CAF1 79315 111 + 1 GAUCU--CUUCUACACAGCAGUUUGCCAUUUUCCCGGAAAACGCAUUUUGCCGCAAAUCGUUUUCCACCCCAUCUCCAUCUCCA---CC-UACCAUCGCCACGAAAUGCUCUAA-AAU .....--.........((((...............((((((((.((((......))))))))))))..................---..-.....(((...)))..))))....-... ( -14.40) >DroYak_CAF1 80311 116 + 1 GAUCUCUCUCCUUCGCAGCCGUUUGCCAUUUUCCCGGGAAACGCAUUUUGCCGCAAAUCGUUUUUAACCCCACCUCCUCCACCACACCC-UUCCCUCGCCACGAAAUGCUCUAA-AAU ....................((((.((........)).))))((((((((..((...................................-.......))..)))))))).....-... ( -14.35) >consensus GAUCU__CCCCCGCACAGCAGUUUGCCAUUUUCCCGGGAAACGCAUUUCGCCGCAAAUCGUUUUCCAACCCACCUCCC__ACC________ACC_UCGCCACGAAAUGCUCUAA_AAU ................((((((((.((........)).))))((........))....................................................))))........ ( -9.19 = -8.88 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:51 2006