| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,970,632 – 4,970,740 |
| Length | 108 |
| Max. P | 0.555595 |
| Location | 4,970,632 – 4,970,740 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 71.32 |
| Mean single sequence MFE | -21.81 |
| Consensus MFE | -8.46 |
| Energy contribution | -7.58 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4970632 108 - 27905053 CAUUUCUA----UGGCGU-UAUAAAACAGUUGUGGAAUUGCUAUUUGUGUAGCAUUAGUAAUUCUUUUUCUCAAUUAUAUGAGGAACACCGAAAUAACGAUAUGG--AAACAAAA ..((((((----((.(((-(((...........((((((((((..((.....)).)))))))))).(((((((......))))))).......)))))).)))))--)))..... ( -27.90) >DroSec_CAF1 77483 96 - 1 GAUUUCGA----UGGGGU-UAUAAAACAGUUGUGGAAUUGCUAU-----------GAGUAAUUCUUU-UAUCAAUUAUAUGAGCAACAACGAAAUAACCAUAUGG--AAACAAAA ..((((.(----((.(((-(((......(((((((((((((...-----------..))))))))..-..(((......))))))))......)))))).))).)--)))..... ( -22.30) >DroSim_CAF1 79302 99 - 1 GAUUUCGA----UGGGGUUUAUAAAACAGUUGUGGAAUUGCUAU-----------GAGUAAUUCUUU-UAUCAAUUAUAUGAGGAACAACGAAAAAAACAUAUGGUUAAACAAAU ..(((((.----((...((((((....(((((.((((((((...-----------..))))))))..-...))))).))))))...)).)))))..................... ( -15.90) >DroEre_CAF1 78130 105 - 1 GUUUUCGA----UGGGGU-UAUAAAACAGUUGGGGAAUUGCUGUUUU--CAACAUGAGCAGUUUUCU-UAUCAAUUAUAAGGGGAACCACCAAAUGCCCAUAUUG--AUAUUAAA ....((((----((((((-........((((((((((..(((((((.--......))))))).))))-..))))))....((....)).......)))).)))))--)....... ( -25.50) >DroYak_CAF1 79170 95 - 1 GAUUUCGAGUUAGGGAGU-UAGAAAACAGUUGUAGAAUUGCUGUUUU--CAACGCGAGCAGUUUUCU-UAUCAAUUAUACGUGAA--------------AUACUG--AAACUACA .......((((.....((-(.(((((((((.........))))))))--)))).....((((((((.-..............)))--------------).))))--.))))... ( -17.46) >consensus GAUUUCGA____UGGGGU_UAUAAAACAGUUGUGGAAUUGCUAUUU____A_C__GAGUAAUUCUUU_UAUCAAUUAUAUGAGGAACAACGAAAUAACCAUAUGG__AAACAAAA ...........................(((((.(((((((((..............)))))))))......)))))....................................... ( -8.46 = -7.58 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:50 2006