Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,946,535 – 4,946,626 |
Length | 91 |
Max. P | 0.711335 |
Location | 4,946,535 – 4,946,626 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.72 |
Mean single sequence MFE | -22.64 |
Consensus MFE | -12.83 |
Energy contribution | -13.33 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.12 |
Mean z-score | -2.83 |
Structure conservation index | 0.57 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4946535 91 + 27905053 GUUCUUUCC-CCCAAAGUCAAUAGCAGCAAAUUCAAUUUUCCCCGGCAAACCAAAGUCUGGGGAAAGUUUCCUCC-------UUUUGCAUCAUACGC---UG .........-................(((((...(((((((((((((........).))))))))))))......-------.))))).........---.. ( -20.00) >DroSec_CAF1 53942 88 + 1 GUUCUUUCC-CCCAAAGUCAAUAGCAGGAAAUUCAAUUUUCCCCGACAAACUAAAGUCUGGGGAAAGUUUCCUCC-------UAUUCCGCUAUACG------ .........-.....(((.(((((.(((((((.....((((((((((........))).)))))))))))))).)-------))))..))).....------ ( -24.60) >DroSim_CAF1 54276 88 + 1 GUUCUUUCC-CCCAAAGUCAAUAGCAGGAAAUUCAAUUUUCCCCGACCAACUAAAGUCUGGGGAAAGUUUCCUCC-------UAUCCCGCUAUACG------ .........-..........(((((.(((.....(((((((((((((........))).))))))))))......-------..))).)))))...------ ( -23.62) >DroEre_CAF1 54087 99 + 1 GUUCUUUCCCCCCAAAGUCAAUAGCAGGAAAUUCAAUUUUCCCCGGCAAACUAAAGUCUGGGGAAAGUUAGCUUCUUCCUUCUGUUCCACUACAUGC---UG ...............(((.(((((.(((((....(((((((((((((........).))))))))))))......))))).)))))..)))......---.. ( -24.90) >DroYak_CAF1 54906 95 + 1 GUUCUUUCC-CCCAAAGUCAAUAGCAGGAAAUUCAAUUUUCCCCGGCAAACUAAAGUCUGGGGAAAGUUGGCUCCUUC------UCCCACUACAUACUCUUG .........-.....(((....((.((((...(((((((((((((((........).)))))))))))))).)))).)------)...)))........... ( -25.00) >DroAna_CAF1 49010 88 + 1 G--CUUUCC-CCCAAAGUCAAUAGCAGGAAAUUCAAUUUUCCCAGGCAAACUAAAGUCUGC-AAAAGUUUCUUCC-------UUUGCCACUUUAUGC---UG (--((((..-...)))))...((((((((((......)))))..((((((...(((...((-....))..)))..-------))))))......)))---)) ( -17.70) >consensus GUUCUUUCC_CCCAAAGUCAAUAGCAGGAAAUUCAAUUUUCCCCGGCAAACUAAAGUCUGGGGAAAGUUUCCUCC_______UAUUCCACUAUACGC___UG ..........................(((.....(((((((((((((........))).))))))))))...)))........................... (-12.83 = -13.33 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:44 2006