Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,946,253 – 4,946,348 |
Length | 95 |
Max. P | 0.559374 |
Location | 4,946,253 – 4,946,348 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 75.70 |
Mean single sequence MFE | -17.16 |
Consensus MFE | -8.44 |
Energy contribution | -9.12 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.09 |
Mean z-score | -2.08 |
Structure conservation index | 0.49 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4946253 95 + 27905053 AAUUGAAUUUUUAUUGAAUGUUGGCGCGGCAUAGCUAGCUGAAACAAAAACAAACCAAA------------ACAACAAAAUGGGGAAUGUUUUGGAAGCCAAAAAAC .(((.(((....))).))).(((((.((((.......)))).............(((((------------(((.............))))))))..)))))..... ( -18.92) >DroEre_CAF1 53767 107 + 1 AAUUGAAUUUUUAUUGAAUGUUGGCGCGGCAUAGCUAGCUGAAACAAAAACAAAACAAAAAAUGAAAAAACACAACAAAAUGGAAAAUGUUUUGGAAGCCAAAAAAC .(((.(((....))).))).(((((.((((.......)))).........(((((((.....((......))((......)).....)))))))...)))))..... ( -15.20) >DroYak_CAF1 54611 81 + 1 AAUUGAAUUUUUAUUGAAUGUUGGCGCGGCAUAGCUAGCUGAAACAAA--------------------------ACAAAAUGGGGAAUGUUUUGGAAGCCAAAAAAC .(((.(((....))).))).(((((.((((.......))))...((((--------------------------(((..........)))))))...)))))..... ( -16.10) >DroAna_CAF1 48704 87 + 1 AAUUGAAUUUUUAUUGAAUGUUGGC--GGCGUAGCCUGUUGAAAUAAAAACU--CCAAAAA--------------AAAAAAGGAGAAU--UUCUGCAGGCAAAAAAA .......(((((.....((((....--.)))).((((((.(((((.....((--((.....--------------......)))).))--))).))))))))))).. ( -18.40) >consensus AAUUGAAUUUUUAUUGAAUGUUGGCGCGGCAUAGCUAGCUGAAACAAAAACA__CCAAA_______________ACAAAAUGGAGAAUGUUUUGGAAGCCAAAAAAC .(((.(((....))).))).(((((.((((.......))))..................................(((((((.....)))))))...)))))..... ( -8.44 = -9.12 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:43 2006