Locus 1722

Sequence ID 3R_DroMel_CAF1
Location 4,943,794 – 4,943,889
Length 95
Max. P 0.964402
window2833

overview

Window 3

Location 4,943,794 – 4,943,889
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 81.89
Mean single sequence MFE -26.00
Consensus MFE -16.80
Energy contribution -17.04
Covariance contribution 0.24
Combinations/Pair 1.07
Mean z-score -2.59
Structure conservation index 0.65
SVM decision value 1.57
SVM RNA-class probability 0.964402
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4943794 95 + 27905053
UAUUUUAACUACCUAAAAGUGUUCGAUUUCAGCACUUUUUCGUGCAGUGCACUGCCGUAACCUGUCAUAUGCAUAUCCAUCCGCAAGGAUGGCCA
..............(((((((((.(....)))))))))).((.((((....))))))...................((((((....))))))... ( -25.60)
>DroSec_CAF1 51233 89 + 1
------ACUUAACUAAAACUGUUCGAUUGCAGCACUUUUUCUUGCAGUGCACUGCUGUAACCUGUCAUAUGCAUAUCCAUCCGCAAGGAUGGCGA
------................(((..((((..........(((((((.....))))))).........))))...((((((....))))))))) ( -23.61)
>DroSim_CAF1 51341 89 + 1
------AGUUAACUAAAACUGUUCGAUUUCAGCACUUUUUCUUGCAGUGCACUGCUGUAACCUGUCAUAUGCAUAUCCAUCCGCAAGGAUGGCGA
------((((......))))..(((......(((.......(((((((.....))))))).........)))....((((((....))))))))) ( -22.19)
>DroEre_CAF1 51481 88 + 1
UGUUUUUACAACGUAAAAGUGUUGGAUUUCGGCCAUUUUUCUUCCAGUGCAGUGCU-------GUCAUAUGCAUAUCCAUCCGCAAGGAUGGAGA
...((((((...))))))(..(((((................)))))..).((((.-------.......)))).(((((((....))))))).. ( -27.49)
>DroYak_CAF1 52230 95 + 1
UGUUUAUGCUACCUAAAAGGGUUCGAUUUCUGCACUUUUUCUCCCGGUGCAGUGCUGUAACCUGUCAUAUGCAUAUCCAUCCGCAAGGAUGGCGA
....(((((.........(((((((....(((((((.........)))))))...)).))))).......))))).((((((....))))))... ( -31.09)
>consensus
U_UUU_AACUACCUAAAAGUGUUCGAUUUCAGCACUUUUUCUUGCAGUGCACUGCUGUAACCUGUCAUAUGCAUAUCCAUCCGCAAGGAUGGCGA
...............................(((((.........)))))..(((...............)))...((((((....))))))... (-16.80 = -17.04 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:42 2006