| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,942,802 – 4,942,900 |
| Length | 98 |
| Max. P | 0.843077 |
| Location | 4,942,802 – 4,942,900 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 88.78 |
| Mean single sequence MFE | -20.69 |
| Consensus MFE | -15.94 |
| Energy contribution | -16.74 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4942802 98 - 27905053 UUGUGCUUUUUAAUUAGCGAAUUAAACCGUUUAAUUUAUUUUGCGUGGCUUACCAAAAUCCUGGUUAAUCUCCGCCAGGAUUUUUCUGUUAAUCCCUC (..(((.....((((((((........)).))))))......)))..)......(((((((((((........))))))))))).............. ( -20.60) >DroSec_CAF1 50263 98 - 1 UGAGGCUUUUUAAUUAGCGAAUUAAAGCGUUAAAUCUAUUUUGCGCGGCUUACCAAAAUCCUGCUUAAUCCCCGCCAGGAUUUUCCUGUUAAUUCCUC .((((((........)))(((((((.((((.(((....))).))))((....))((((((((((.........).)))))))))....)))))))))) ( -22.00) >DroSim_CAF1 50384 98 - 1 UGAGGCUUUUUAAUUAGCGAAUUAAAGCGUUAAAUCUAAUUUGCGUGGCUUACCAAAAUCCUGGUUAAUCCUCGCCAGGAUUUUCCUGUUAAUCCCUC .((((...........((((((((............)))))))).((((.....(((((((((((........)))))))))))...))))...)))) ( -25.10) >DroEre_CAF1 50451 98 - 1 UGAGGCUCUUUAAUUAGCAAAUUUAAACGUUUAAUCCAUUUUGCGUAGCUUACCGAAAUCCUGGUUAAUCCCCGCCAGAAUUUUCAAGUUAAUCCAUC ...((...........(((((..................))))).((((((...(((((.(((((........))))).))))).))))))..))... ( -15.67) >DroYak_CAF1 51210 98 - 1 UGAGGCUUUUUAAUUAGCAAAUUAAACCGUUUAAUCCAUUUUGCGUGGCUUACCAAAAUCCUGGUUAAUCCCCGCCAGGAUUUCCCAGUUAAUCCAUC ...((....((((((.(((((..................))))).(((....)))((((((((((........))))))))))...)))))).))... ( -20.07) >consensus UGAGGCUUUUUAAUUAGCGAAUUAAACCGUUUAAUCUAUUUUGCGUGGCUUACCAAAAUCCUGGUUAAUCCCCGCCAGGAUUUUCCUGUUAAUCCCUC ..(((((.(((((((....)))))))((((............)))))))))...(((((((((((........))))))))))).............. (-15.94 = -16.74 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:41 2006