Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,942,011 – 4,942,103 |
Length | 92 |
Max. P | 0.915241 |
Location | 4,942,011 – 4,942,103 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 74.10 |
Mean single sequence MFE | -28.98 |
Consensus MFE | -8.42 |
Energy contribution | -7.94 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.23 |
Mean z-score | -2.01 |
Structure conservation index | 0.29 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4942011 92 - 27905053 UUAACCUUCCUCUCUUUUUCUGCGG--GGUGGGGGAGGGGGUUGGGCUUGAGAGGAGCUGGGCGCUCAAAUAUGUGUGCGAACAAAUUUCCGCU (((((((.(((((((..(((....)--))..)))))))))))))).....((.((((.((..(((.((......)).)))..))...)))).)) ( -30.40) >DroSec_CAF1 49525 90 - 1 UUAACCUUCCUCUCUUUUUCUCAGUUUUGUUGGGGAAGGGGAAGGGC----GAGGAGUUGGGCGCUCAAAUAUGUGUGCGAACAAAUUUCCGCU ....(((((((((....(((((((.....))))))))))))))))((----(..((.(((..(((.((......)).)))..))).))..))). ( -34.40) >DroSim_CAF1 49655 72 - 1 UUAACCUUCCUCUCUUUUUC------------------GGGGAGGGA----AUGGAGCUGGGCGCUCAAAUAUGUGUGCGAACAAAUUUCCGCU ....((((((((........------------------)))))))).----..((((.((..(((.((......)).)))..))...))))... ( -23.70) >DroEre_CAF1 49713 79 - 1 UUAACCUUCCUUUCUU-UUCGGAUG--GGGAA----GGACGC----U----GGGGAGUUGGGCACUCAAAUAUGUGUGCGAACAAAUUUCCGCU ....(((((((((((.-...))).)--)))))----))..((----.----((..(.(((.((((.((....)).))))...))).)..)))). ( -26.80) >DroYak_CAF1 50475 82 - 1 UUAACCUUCCUCUCUUGUUCGGCGG--GGUGAGG--GGACGC----A----GGAGAGUUGGGCGCUCAAAUAUGUGGGCGAGCAAAUUUCCGCU ......(((((((((((.....)))--)).))))--))..((----.----(((((.(((..((((((......))))))..))).))))))). ( -29.60) >consensus UUAACCUUCCUCUCUUUUUCGGAGG__GGUGAGG__GGGGGC_GGGA____GAGGAGUUGGGCGCUCAAAUAUGUGUGCGAACAAAUUUCCGCU ....(((..((((........................................))))..)))(((........))).(((..........))). ( -8.42 = -7.94 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:40 2006