Locus 172

Sequence ID 3R_DroMel_CAF1
Location 835,109 – 835,218
Length 109
Max. P 0.717964
window286

overview

Window 6

Location 835,109 – 835,218
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.65
Mean single sequence MFE -28.82
Consensus MFE -19.23
Energy contribution -20.16
Covariance contribution 0.93
Combinations/Pair 1.21
Mean z-score -1.78
Structure conservation index 0.67
SVM decision value 0.39
SVM RNA-class probability 0.717964
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 835109 109 + 27905053
CACACUUUUGCAUUUCAGCGAUUUGUGCUCACAAUCCGAAGUGCAGCUUUGUUGUUG-----------CAACAACUUUGUGUAAUAUUUGUUUUAUAAUUCAAUUAUGGUGGAAUGCUUU
.........((((((((((((..(((...(((((.......((((((......))))-----------))......)))))..))).)))).(((((((...)))))))))))))))... ( -24.82)
>DroSec_CAF1 10553 120 + 1
CACACUCUUGCAUUUCAGCGAUUUGUGCUCACAAUCCGCAGUGCAGCUUUGUUGUUGCGCAAGGAAAGCAACAACUUUGUGUAAUAUUUGUUUUAUAAUUCAAUUAUGGCGGAAUGCUUU
.........(((((((.(((..((((....))))..)))......(((..((((((((.........))))))))....(((((........)))))..........))))))))))... ( -30.70)
>DroSim_CAF1 9464 120 + 1
CACACUCUUGCAUUUCAGCGAUUUGUGCUCACAAUCCGAAGUGCAGCUUUGUUGUUGCGCAAGGAAAGCAACAACUUUGUGUAAUAUUUGUUUUAUAAUUCAAUUAUGGCGGAAUGCUUU
.........(((((((.((((.(((((((.....(((...(((((((......)))))))..))).))).))))..))))((.(((.(((..........))).))).)))))))))... ( -30.70)
>DroEre_CAF1 12266 102 + 1
------------------UGACUUGCGCUCAAAGUGCGAUGUGCAGCUUUGUUGUUGCGCGAAGAUGGCAACAACAGCGUAUGAUAUUAGUUUUGUAAUUCAAUUAUGGCGGAAUGCUUU
------------------..((((((((.....)))))).))((.((.((((((((((.........)))))))))).)).........(((((((.((......)).)))))))))... ( -25.80)
>DroYak_CAF1 10505 119 + 1
CACACUCUUGCAUUUCAGCGACUUGUACUUAAAAUCCAAAGUGCACCUUUGUUGUUGCGC-AUGAAAGCAACAACUUUGUGUAAUAUUUGUUUUAUAAUUCAGUAAUGGUGGAAUGCCUU
.........((((((((.((..(((...(((.((..((((.(((((....((((((((..-......))))))))...)))))...))))..)).)))..)))...)).))))))))... ( -32.10)
>consensus
CACACUCUUGCAUUUCAGCGAUUUGUGCUCACAAUCCGAAGUGCAGCUUUGUUGUUGCGC_AGGAAAGCAACAACUUUGUGUAAUAUUUGUUUUAUAAUUCAAUUAUGGCGGAAUGCUUU
.........(((((((.......((((((..........))))))(((..((((((((.........))))))))....(((((........)))))..........))))))))))... (-19.23 = -20.16 +   0.93)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:47 2006