Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,939,155 – 4,939,253 |
Length | 98 |
Max. P | 0.988133 |
Location | 4,939,155 – 4,939,253 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 78.71 |
Mean single sequence MFE | -23.06 |
Consensus MFE | -21.26 |
Energy contribution | -21.50 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.23 |
Structure conservation index | 0.92 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4939155 98 - 27905053 GGCCAACAGAGAAUUCUCGUUGGCCAACAGCUGCUCGUCGCUGCGACAGUUUCGCACCCCAUCCCACCGCACCGCACCAACCCUCAC----UCCCUCCCUCA (((((((.(((....))))))))))....((.((.....))(((((.....)))))............)).................----........... ( -24.10) >DroSec_CAF1 46664 97 - 1 GGCCAACAGCGAAUUCUCGUUGGCCAACAGCUGCUCGUCGCUGCGACAGUUUCGCACCCCACUCCAA-----GCCACCAACCCCCACUUCCUCCCUCCCUCG (((...((((((....))))))((....(((((.((((....)))))))))..))............-----)))........................... ( -20.30) >DroSim_CAF1 46783 97 - 1 GGCCAACAGAGAAUUCUUGUUGGCCAACAGCUGCUCAUCGCUGCGACAGUUUCGCACCCCACUCCAC-----GCCACCAACCCCCACUUCCUCCCUCCCUCG ((((((((.((....))))))))))....((.((.....))(((((.....)))))...........-----))............................ ( -21.40) >DroEre_CAF1 46867 75 - 1 GGCCAACAGAGAAUUCUCGUUGGCCAACAGCUGCUCGUCGCUGCGACAGUUUGGCACCCCCA-----------------------AU----UCCCUCCCUCA (((((((.(((....))))))))))....((((.((((....))))))))((((.....)))-----------------------).----........... ( -24.90) >DroYak_CAF1 47635 78 - 1 GGCCAACAGAGAAUUCUCGUUGGCCAACAGCUGCUCGUCGCUGCGACAGUUUGGCACCCCCAUCC--------------------AU----UCCCUCCCCCA (((((((.(((....))))))))))...(((((.((((....)))))))))(((.....)))...--------------------..----........... ( -24.60) >consensus GGCCAACAGAGAAUUCUCGUUGGCCAACAGCUGCUCGUCGCUGCGACAGUUUCGCACCCCAAUCCA________CACCAACCC_CAC____UCCCUCCCUCA (((((((.(((....))))))))))...(((((.((((....)))))))))................................................... (-21.26 = -21.50 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:39 2006