| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,935,734 – 4,935,827 |
| Length | 93 |
| Max. P | 0.632033 |
| Location | 4,935,734 – 4,935,827 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.96 |
| Mean single sequence MFE | -24.96 |
| Consensus MFE | -15.40 |
| Energy contribution | -15.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4935734 93 - 27905053 -GACGA--GUGCAAACAAAGAA-AAAG---CAUUUUGUUUGUCAAAUGUUUGUCAUUUGUAAAUGUCAAACGGCGGUCGAGCAUAUUUUGCAUACA----------UA----CA -..(((--.(((..(((((.((-((..---..)))).)))))....((((((.((((....)))).))))))))).))).(((.....))).....----------..----.. ( -23.00) >DroVir_CAF1 50802 99 - 1 -GCAGGACCCACUGACAA---A-AGGA---CAUUUUGUUUGUCAAAUGUUUGUCAUUUGUAAAUGUCAAACGGCGGUCGAGCAUAUUUUGCAUGCAUUAG--AU-GGA----GA -(((.(((((..((((((---(-..((---...))..)))))))..((((((.((((....)))).))))))).))))..(((.....))).))).....--..-...----.. ( -25.50) >DroGri_CAF1 49189 99 - 1 -GCAGGAUGCGCAGACAA---A-AGGA---CAUUUUGUUUGUCAAAUGUUUGUCAUUUGUAAAUGUCAAACGGCGGUCGAGCAUAUUUUGCAUGCAUACA--U-----GACAGA -((.(..(((((((((((---(-(...---..))))))))))....((((((.((((....)))).)))))))))..)..))....((((((((....))--)-----).)))) ( -26.70) >DroWil_CAF1 43267 105 - 1 -CACAU--ACUCACACACAGAACAGAGCUACAUUUUGUUUGUCAAAUGUUUGUCAUUUGUAAAUGUCAAACGGCGGUCGAGCAUAUUUUGCAUACAAGGG--ACUCCA----CA -.....--..................((.......((((((.(...((((((.((((....)))).))))))...).))))))......))......((.--...)).----.. ( -18.62) >DroMoj_CAF1 47603 103 - 1 -GGCCGGCGCGCCGACAA---A-AGGA---CAUUUUGUUUGUCAAAUGUUUGUCAUUUGUAAAUGUCAAACGGCGGUCGAGCAUAUUUUGCAUUCAUAGA--AC-CGAAACGGA -.((((((.(((((((((---(-..((---...))..))))))....(((((.((((....)))).))))))))))))).))..................--.(-((...))). ( -31.00) >DroPer_CAF1 81335 104 - 1 GGACGG--AGGCAAACAACGAAAAAAG---CAUUUUGUUUGUCAAAUGUUUGUCAUUUGUAAAUGUCAAACGGCGGUCGAGCAUAUUUUGCAUACAUGAACGAC-AGA----CA ......--.(((((((((.........---....)))))))))...((((((((.((..(..(((.((((..((......))....)))))))..)..)).)))-)))----)) ( -24.92) >consensus _GACGG__GCGCAGACAA___A_AGAA___CAUUUUGUUUGUCAAAUGUUUGUCAUUUGUAAAUGUCAAACGGCGGUCGAGCAUAUUUUGCAUACAUAAA__AC__GA____CA ...................................((((((.(...((((((.((((....)))).))))))...).))))))............................... (-15.40 = -15.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:37 2006