Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,932,330 – 4,932,423 |
Length | 93 |
Max. P | 0.974218 |
Location | 4,932,330 – 4,932,423 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 91.43 |
Mean single sequence MFE | -29.76 |
Consensus MFE | -29.66 |
Energy contribution | -29.26 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.09 |
Mean z-score | -1.45 |
Structure conservation index | 1.00 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4932330 93 - 27905053 -U-UCCCC---CGCCG------CCGCCAUUGGUAAAGCGCUUACAGCUGCAAAGCUCAUCAGCAGCGUCAGUGGCAGGACAUCAGUAUCCGUAUCAUUCUGGCU -.-.....---....(------(((((((((((((.....)))).(((((...........)))))..))))))).(((........)))..........))). ( -27.90) >DroSec_CAF1 39810 94 - 1 UU-UCCCC---CGCCG------CCGCCACUGGUAAAGCGCUUACAGCUGCAAAGCUCAUCAGCAGCGUCAGUGGCAGGACAUCAGUAUCCGUAUCAUUCUGGCU ..-.....---....(------(((((((((((((.....)))).(((((...........)))))..))))))).(((........)))..........))). ( -30.20) >DroSim_CAF1 39947 95 - 1 UUUUCCCC---CGCCG------CCGCCACUGGUAAAGCGCUUACAGCUGCAAAGCUCAUCAGCAGCGUCAGUGGCAGGACAUCAGUAUCCGUAUCAUUCUGGCU ........---....(------(((((((((((((.....)))).(((((...........)))))..))))))).(((........)))..........))). ( -30.20) >DroEre_CAF1 39965 97 - 1 UC-UACCCCACCGCCG------CCGCCACUGGUAAAGCGCUUAUAGCUGCAAAGCUCAUCAGCAGCGUCGGUGGCAGGACAUCAGUAUCCGUAUCAUUCUGGCU ..-............(------((((((((((....(((((.((((((....)))).)).))).)).)))))))).(((........)))..........))). ( -30.30) >DroYak_CAF1 40513 104 - 1 UUUUUCCCCACCGCCGCCUUCGCCGCCACUGGUAAAGCGCUUACAGCUGCAAAGCUCUUCAGCAGCGUCGGUGGCAGGACAUCAGUAUCCAUAUCAUUCUGGCU ....(((((((((.((((((..(((....)))..))).(((...((((....))))....))).))).))))))..)))..((((.............)))).. ( -30.22) >consensus UU_UCCCC___CGCCG______CCGCCACUGGUAAAGCGCUUACAGCUGCAAAGCUCAUCAGCAGCGUCAGUGGCAGGACAUCAGUAUCCGUAUCAUUCUGGCU ............(((.........((((((((....(((((...((((....))))....))).)).)))))))).(((........)))..........))). (-29.66 = -29.26 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:36 2006