| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,922,062 – 4,922,159 |
| Length | 97 |
| Max. P | 0.711707 |
| Location | 4,922,062 – 4,922,159 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 75.26 |
| Mean single sequence MFE | -31.41 |
| Consensus MFE | -16.33 |
| Energy contribution | -15.20 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4922062 97 + 27905053 GAUGUGGGCGUUCACAACAAUGACAGCGAUGACGUUGUUUGGACUA-AAACCGGCAAAAGGGAACA-------UCGCUGAUGACGUGUGGUUGUCAUUAGAGGAC--- (((((...((((((.(((((((.((....)).))))))))))))..-...((.......))).)))-------)).(((((((((......))))))))).....--- ( -28.80) >DroPse_CAF1 60406 96 + 1 GAAACGGACGUUUACAGCAACGACAACGAUGAGGUUGUCG--CCGACAGGACGGCC---UGGGAGA-------CCGUUGAUGACGUGUGGUUGUCAUUAGAGGACCAC .......(((((..((((...((((((......))))))(--(((......)))).---.((....-------))))))..)))))((((((.((....)).)))))) ( -37.10) >DroEre_CAF1 29608 97 + 1 GAUGGGGGCGUUCACAACAAUGACAGCGAUGACAUUGUUUGGGCCA-AAGCCGGCAAAAGGGAACA-------UCGCUGAUGACGUGUGGUUGUCAUUAGAGGAU--- ......((((..((((.......((((((((...((.(((..(((.-.....)))..))).)).))-------))))))......))))..))))..........--- ( -28.72) >DroYak_CAF1 30049 98 + 1 GAUGGGGGCGUUCACAACAAUGACAGCGAUGACGUUGUUUGGGCCAAAAGCCGGCAAAAGGGAACA-------UCGCUGAUGACGUGUGGUUGUCAUUAGAGGAU--- ......((((..((((.......((((((((...((.(((..(((.......)))..))).)).))-------))))))......))))..))))..........--- ( -29.32) >DroAna_CAF1 24785 100 + 1 GAAAUGGGCGGCCACAACAAUGACAACUAUGACAUUGU----ACUA-UAGGAGGCCAAAGGAAGCCCCUGCUAAUGCUGAUGACGUGUGGUUGUCAUUAGAGUAU--- ......((((((((((((((((.((....)).))))))----....-((((.(((........)))))))...............))))))))))..........--- ( -28.90) >DroPer_CAF1 67478 96 + 1 GAAACGGGCGUUUACAGCAACGACAACGAUGAGGUUGUCG--GCGACAGGACGGCC---UGGGAGA-------CCGUUGAUGACGUGUGGUUGUCAUUAGAGGACCAC ..(((((.(((((...((..(((((((......)))))))--))....))))).))---.((....-------)))))........((((((.((....)).)))))) ( -35.60) >consensus GAAACGGGCGUUCACAACAAUGACAACGAUGACGUUGUUU__GCCA_AAGCCGGCAAAAGGGAACA_______UCGCUGAUGACGUGUGGUUGUCAUUAGAGGAC___ ................((((((.((....)).))))))...................................((.(((((((((......))))))))).))..... (-16.33 = -15.20 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:35 2006