Locus 1714

Sequence ID 3R_DroMel_CAF1
Location 4,919,054 – 4,919,164
Length 110
Max. P 0.576069
window2824

overview

Window 4

Location 4,919,054 – 4,919,164
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.91
Mean single sequence MFE -24.87
Consensus MFE -15.79
Energy contribution -16.17
Covariance contribution 0.38
Combinations/Pair 1.20
Mean z-score -1.75
Structure conservation index 0.63
SVM decision value 0.08
SVM RNA-class probability 0.576069
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4919054 110 - 27905053
-UUUUUUU--------GCAACACGAACUAUCAGCGAACCGAAACGUUGAGAAAAUUGUUUGCUCAAGUGA-UUAGUUUUACUUUCACUUGAAAGCAGGAAAUUUGUUUUAGGCCAUUUCU
-.((((((--------((....(((((..((((((........)))))).......))))).((((((((-..((.....)).))))))))..))))))))................... ( -26.00)
>DroSec_CAF1 26635 110 - 1
-UUUUUUU--------GCAACACGAACUAUCAGCGAACCGAAACGUUGAGAAAAUUGUUUGCUCAAGUGA-UUAGUUUUACUUUCACUUGAAAGCAGGAAAUUAGUUUUAUGCCAUUUCU
-.((((((--------((....(((((..((((((........)))))).......))))).((((((((-..((.....)).))))))))..))))))))................... ( -26.00)
>DroSim_CAF1 26719 111 - 1
AUUUUUUU--------GCAACACGAACUAUCAGCGAACCGAAACGUUGAGAAAAUUGUUUGCUCAAGUGA-UUAGUUUUACUUUCACUUGAAAGCAGGAAAUUAGUUUUAUGCCAUUUCU
..((((((--------((....(((((..((((((........)))))).......))))).((((((((-..((.....)).))))))))..))))))))................... ( -26.00)
>DroEre_CAF1 25780 107 - 1
----UUUU--------UCAACACGAACUAUCAGCGAACCGAAACGUUGAGAAAAUUGUUUGCUCAAGUGA-UUAGUUUUACUUUCACUUGAAAGCAGGAAAUUAGUUUUAUGCCACUUAU
----....--------.......((((((((((((........))))))........(((((((((((((-..((.....)).))))))))..)))))....))))))............ ( -23.20)
>DroYak_CAF1 27055 106 - 1
-----GGU--------UCAACACGAACUAUCAGCGAACCGAAACGUUGAGAAAAUUGUUUGCUCAAGUGA-UUACUUUUACUUUCACUUGAAAGCAGGAAAUUAGAUUUGUACCAUUUCU
-----(((--------.(((.........((((((........))))))...((((.(((((((((((((-............))))))))..))))).))))....))).)))...... ( -24.40)
>DroAna_CAF1 21987 114 - 1
-GUUAUUUCUAUCACGCCAACACGAAACG-AAACGAACCGAAUCGUU----AAAUUGUUUACUCGGCUAUGGCAUUAUAACUUUCAUUUGAAAGUGGGAAAUGCAUUAUCUGGAAUUUAU
-.....(((((....(((......(((((-((((((......)))))----...))))))....)))....(((((...((((((....))))))....)))))......)))))..... ( -23.60)
>consensus
_UUUUUUU________GCAACACGAACUAUCAGCGAACCGAAACGUUGAGAAAAUUGUUUGCUCAAGUGA_UUAGUUUUACUUUCACUUGAAAGCAGGAAAUUAGUUUUAUGCCAUUUCU
.............................((((((........))))))...((((.(((((((((((((...((.....)).))))))))..))))).))))................. (-15.79 = -16.17 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:34 2006