Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,915,636 – 4,915,733 |
Length | 97 |
Max. P | 0.630879 |
Location | 4,915,636 – 4,915,733 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 78.36 |
Mean single sequence MFE | -19.03 |
Consensus MFE | -12.11 |
Energy contribution | -12.67 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.29 |
Mean z-score | -1.41 |
Structure conservation index | 0.64 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630879 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4915636 97 + 27905053 GCAGGUGUUUGCUCAUA--U-AUAGUGACAGACACCUAAUGAAUUAUUGGUUAUUUUCUGCCCCCAUUUUAUUUCCUAAUCGCAGGCAAGCUCAACGCUC (((((((((((.((((.--.-...)))))))))))))((((((.....(((........))).....))))))........)).....(((.....))). ( -22.80) >DroSec_CAF1 23284 99 + 1 GCAGGUGUUUGCUCAUAUAU-AUAGUGACAGACACCUAAUGAAUUAUUGGUUAUUUUCUGCCCCCAUUUUAUUUCCUAAUCGCAGGCAAGCUCAACACCC (((((((((((.((((....-...)))))))))))))((((((.....(((........))).....))))))........))................. ( -21.30) >DroSim_CAF1 23311 99 + 1 GCAGGUGUUUGCUCAUAUAU-AUAGUGACAGACACCUAAUGAAUUAUUGGUUAUUUUCUGCCCCCAUUUUAUUUCCUAAUCGCAGGCAAGCUCAACACCC (((((((((((.((((....-...)))))))))))))((((((.....(((........))).....))))))........))................. ( -21.30) >DroEre_CAF1 22357 96 + 1 GCAGGUGUUUGCUCAUAUGU----GUGACAGAAACCUAAUGAAUUAUUGGUUAUUUUCUGCCCCCAUUUUAUUUCCUAAUCGCAGGCAACCUCAACACCC (.((((((((((((((....----))))((((((.((((((...))))))....)))))).....................)))))).)))))....... ( -18.30) >DroWil_CAF1 23489 78 + 1 CCAGGUGUUUGUUCAUA----ACAAAAAAGGGCACACUAUAAAUUAUUACUUUUAUUUUGUU---------------ACUACCAUACAGUUUC---ACCC ...((((.((((...((----(((((((((((.................))))).)))))))---------------).......))))...)---))). ( -10.73) >DroYak_CAF1 23491 99 + 1 GCAGGUGUUUGCCCAUAUACGAUAGUGACAGACACCUAAUGAAUUAUUGGUUAUU-UCUGUCCCCAUUUUAUUUCCUAAUCACAGGCAACCUCAGCGCCC (((((((((((..(((........))).)))))))))...........((((...-(((((....................))))).))))...)).... ( -19.75) >consensus GCAGGUGUUUGCUCAUAUAU_AUAGUGACAGACACCUAAUGAAUUAUUGGUUAUUUUCUGCCCCCAUUUUAUUUCCUAAUCGCAGGCAAGCUCAACACCC ..(((((((((.((((........))))))))))))).....................((((......................))))............ (-12.11 = -12.67 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:33 2006